Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02987

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02985 and MPMX19_02986 overlap by 4 nucleotidesMPMX19_02986 and MPMX19_02987 are separated by 152 nucleotidesMPMX19_02987 and MPMX19_02988 overlap by 8 nucleotidesMPMX19_02988 and MPMX19_02989 are separated by 221 nucleotides MPMX19_02985: MPMX19_02985 - hypothetical protein, at 247,727 to 248,656 _02985 MPMX19_02986: MPMX19_02986 - Inner membrane ABC transporter permease protein YdcV, at 248,653 to 249,453 _02986 MPMX19_02987: MPMX19_02987 - hypothetical protein, at 249,606 to 249,875 _02987 MPMX19_02988: MPMX19_02988 - hypothetical protein, at 249,868 to 250,362 _02988 MPMX19_02989: MPMX19_02989 - Riboflavin transport system permease protein RibX, at 250,584 to 251,393 _02989 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1at 248.637 kb on - strandat 248.699 kb on + strandat 248.700 kb on - strandat 248.700 kb on - strandat 248.758 kb on + strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 248.759 kb on - strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.319 kb on + strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.320 kb on - strand, within MPMX19_02986at 249.412 kb on + strandat 249.412 kb on + strandat 249.413 kb on - strandat 249.413 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.581 kb on - strandat 249.585 kb on + strandat 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.840 kb on + strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 249.841 kb on - strand, within MPMX19_02987at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.231 kb on + strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.232 kb on - strand, within MPMX19_02988at 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.318 kb on + strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.319 kb on - strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.320 kb on + strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.321 kb on - strandat 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.713 kb on + strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989at 250.714 kb on - strand, within MPMX19_02989

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
248,637 - +0.4
248,699 + -0.1
248,700 - -0.3
248,700 - -0.9
248,758 + MPMX19_02986 0.13 +1.4
248,759 - MPMX19_02986 0.13 +0.3
248,759 - MPMX19_02986 0.13 -2.1
248,759 - MPMX19_02986 0.13 -0.4
248,759 - MPMX19_02986 0.13 -1.5
249,319 + MPMX19_02986 0.83 -0.1
249,319 + MPMX19_02986 0.83 -0.6
249,319 + MPMX19_02986 0.83 -0.9
249,319 + MPMX19_02986 0.83 +0.3
249,320 - MPMX19_02986 0.83 -0.0
249,320 - MPMX19_02986 0.83 +0.1
249,320 - MPMX19_02986 0.83 +0.0
249,412 + +0.9
249,412 + -1.8
249,413 - +0.1
249,413 - -0.4
249,581 - -0.4
249,581 - -2.7
249,581 - -1.8
249,585 + -1.9
249,840 + MPMX19_02987 0.87 -1.6
249,840 + MPMX19_02987 0.87 -0.7
249,840 + MPMX19_02987 0.87 -1.3
249,840 + MPMX19_02987 0.87 +0.9
249,841 - MPMX19_02987 0.87 -1.6
249,841 - MPMX19_02987 0.87 -0.4
250,231 + MPMX19_02988 0.73 -1.1
250,231 + MPMX19_02988 0.73 -0.5
250,231 + MPMX19_02988 0.73 -0.5
250,231 + MPMX19_02988 0.73 +0.4
250,231 + MPMX19_02988 0.73 -1.0
250,231 + MPMX19_02988 0.73 -2.3
250,231 + MPMX19_02988 0.73 -2.3
250,232 - MPMX19_02988 0.74 -1.0
250,232 - MPMX19_02988 0.74 -0.7
250,232 - MPMX19_02988 0.74 +1.7
250,232 - MPMX19_02988 0.74 -0.3
250,318 + -1.1
250,318 + -1.0
250,318 + -1.0
250,318 + -1.6
250,319 - -0.1
250,319 - -0.9
250,319 - -0.8
250,319 - -0.7
250,319 - -1.8
250,319 - -1.1
250,320 + -0.7
250,320 + -1.1
250,320 + +0.4
250,320 + -2.2
250,320 + +0.5
250,320 + -0.7
250,320 + -1.0
250,320 + -1.1
250,321 - +0.3
250,321 - -1.3
250,321 - -0.2
250,321 - +0.6
250,321 - +0.3
250,321 - -1.9
250,713 + MPMX19_02989 0.16 -0.9
250,713 + MPMX19_02989 0.16 -0.2
250,713 + MPMX19_02989 0.16 -0.4
250,713 + MPMX19_02989 0.16 -2.5
250,713 + MPMX19_02989 0.16 +0.3
250,713 + MPMX19_02989 0.16 -0.3
250,714 - MPMX19_02989 0.16 -2.5
250,714 - MPMX19_02989 0.16 -0.8

Or see this region's nucleotide sequence