Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02967

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02966 and MPMX19_02967 are separated by 5 nucleotidesMPMX19_02967 and MPMX19_02968 are separated by 85 nucleotides MPMX19_02966: MPMX19_02966 - Carboxylesterase NlhH, at 225,323 to 226,096 _02966 MPMX19_02967: MPMX19_02967 - Efflux pump periplasmic linker BepF, at 226,102 to 227,265 _02967 MPMX19_02968: MPMX19_02968 - multidrug efflux RND transporter permease subunit OqxB28, at 227,351 to 230,539 _02968 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.170 kb on - strandat 225.198 kb on - strandat 225.252 kb on + strandat 225.252 kb on + strandat 225.253 kb on - strandat 225.253 kb on - strandat 225.253 kb on - strandat 225.258 kb on - strandat 225.276 kb on + strandat 225.276 kb on + strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.521 kb on + strand, within MPMX19_02966at 225.794 kb on + strand, within MPMX19_02966at 225.803 kb on + strand, within MPMX19_02966at 225.803 kb on + strand, within MPMX19_02966at 225.804 kb on - strand, within MPMX19_02966at 225.804 kb on - strand, within MPMX19_02966at 225.836 kb on + strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 226.095 kb on - strandat 226.095 kb on - strandat 226.095 kb on - strandat 226.276 kb on + strand, within MPMX19_02967at 226.276 kb on + strand, within MPMX19_02967at 226.276 kb on + strand, within MPMX19_02967at 226.277 kb on - strand, within MPMX19_02967at 226.277 kb on - strand, within MPMX19_02967at 226.277 kb on - strand, within MPMX19_02967at 226.411 kb on + strand, within MPMX19_02967at 226.412 kb on - strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.855 kb on + strand, within MPMX19_02967at 226.855 kb on + strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.970 kb on - strand, within MPMX19_02967at 226.970 kb on - strand, within MPMX19_02967at 227.002 kb on + strand, within MPMX19_02967at 227.003 kb on - strand, within MPMX19_02967at 227.092 kb on + strand, within MPMX19_02967at 227.093 kb on - strand, within MPMX19_02967at 227.263 kb on + strandat 227.264 kb on - strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.585 kb on + strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.586 kb on - strandat 227.801 kb on + strand, within MPMX19_02968at 227.801 kb on + strand, within MPMX19_02968at 227.801 kb on + strand, within MPMX19_02968at 227.802 kb on - strand, within MPMX19_02968at 227.802 kb on - strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.813 kb on + strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.814 kb on - strand, within MPMX19_02968at 227.825 kb on + strand, within MPMX19_02968at 227.825 kb on + strand, within MPMX19_02968at 227.826 kb on - strand, within MPMX19_02968at 227.826 kb on - strand, within MPMX19_02968at 227.826 kb on - strand, within MPMX19_02968at 227.826 kb on - strand, within MPMX19_02968at 227.826 kb on - strand, within MPMX19_02968at 227.903 kb on + strand, within MPMX19_02968at 227.903 kb on + strand, within MPMX19_02968at 227.903 kb on + strand, within MPMX19_02968at 227.904 kb on - strand, within MPMX19_02968at 228.055 kb on - strand, within MPMX19_02968at 228.055 kb on - strand, within MPMX19_02968at 228.055 kb on - strand, within MPMX19_02968at 228.182 kb on + strand, within MPMX19_02968at 228.182 kb on + strand, within MPMX19_02968at 228.182 kb on + strand, within MPMX19_02968at 228.182 kb on + strand, within MPMX19_02968at 228.183 kb on - strand, within MPMX19_02968at 228.183 kb on - strand, within MPMX19_02968at 228.183 kb on - strand, within MPMX19_02968

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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225,110 + +0.1
225,110 + -1.5
225,110 + +0.3
225,110 + +0.3
225,110 + -1.0
225,110 + -1.6
225,110 + -0.1
225,110 + +0.5
225,110 + +0.4
225,110 + -0.7
225,110 + -1.4
225,110 + -0.9
225,110 + -1.0
225,110 + -0.1
225,111 - -0.9
225,111 - -0.2
225,111 - -0.1
225,111 - +1.2
225,111 - -2.4
225,111 - +1.4
225,111 - -2.4
225,111 - -0.7
225,112 + +0.3
225,112 + -1.1
225,112 + -0.5
225,112 + -1.7
225,112 + -1.5
225,112 + -0.6
225,112 + -2.4
225,112 + -1.6
225,112 + -1.0
225,112 + -1.1
225,112 + +1.1
225,112 + -0.0
225,112 + -1.0
225,112 + -0.4
225,112 + +1.9
225,112 + +1.4
225,112 + -0.6
225,113 - -1.0
225,113 - -1.0
225,113 - +0.3
225,113 - -0.6
225,113 - -1.7
225,113 - -2.0
225,113 - -2.1
225,113 - -0.8
225,113 - -1.5
225,113 - -2.2
225,170 - +2.4
225,198 - -0.7
225,252 + +1.7
225,252 + -0.4
225,253 - -0.2
225,253 - -0.4
225,253 - -1.7
225,258 - -0.1
225,276 + -1.5
225,276 + -2.2
225,277 - -1.5
225,277 - -1.1
225,277 - -0.4
225,277 - -1.1
225,277 - -1.9
225,277 - -0.7
225,277 - +0.6
225,419 + MPMX19_02966 0.12 -0.5
225,419 + MPMX19_02966 0.12 -1.4
225,419 + MPMX19_02966 0.12 -0.5
225,419 + MPMX19_02966 0.12 -2.1
225,420 - MPMX19_02966 0.13 -0.6
225,420 - MPMX19_02966 0.13 -0.2
225,420 - MPMX19_02966 0.13 -1.0
225,420 - MPMX19_02966 0.13 -1.3
225,420 - MPMX19_02966 0.13 -0.6
225,521 + MPMX19_02966 0.26 -0.7
225,794 + MPMX19_02966 0.61 -2.3
225,803 + MPMX19_02966 0.62 -0.1
225,803 + MPMX19_02966 0.62 -0.4
225,804 - MPMX19_02966 0.62 -0.9
225,804 - MPMX19_02966 0.62 -0.6
225,836 + MPMX19_02966 0.66 -0.6
225,837 - MPMX19_02966 0.66 -2.0
225,837 - MPMX19_02966 0.66 -2.1
225,837 - MPMX19_02966 0.66 -2.0
225,837 - MPMX19_02966 0.66 -0.4
225,837 - MPMX19_02966 0.66 -0.0
225,932 + MPMX19_02966 0.79 -1.3
225,932 + MPMX19_02966 0.79 -1.1
225,932 + MPMX19_02966 0.79 -0.3
225,933 - MPMX19_02966 0.79 -1.3
225,933 - MPMX19_02966 0.79 -0.9
225,933 - MPMX19_02966 0.79 +0.4
225,933 - MPMX19_02966 0.79 -1.1
225,933 - MPMX19_02966 0.79 -1.5
226,095 - +0.1
226,095 - -2.1
226,095 - -1.5
226,276 + MPMX19_02967 0.15 +1.9
226,276 + MPMX19_02967 0.15 -0.9
226,276 + MPMX19_02967 0.15 +0.2
226,277 - MPMX19_02967 0.15 +1.7
226,277 - MPMX19_02967 0.15 -0.6
226,277 - MPMX19_02967 0.15 -0.7
226,411 + MPMX19_02967 0.27 -0.6
226,412 - MPMX19_02967 0.27 -0.4
226,750 + MPMX19_02967 0.56 +0.1
226,750 + MPMX19_02967 0.56 -2.0
226,750 + MPMX19_02967 0.56 -0.9
226,750 + MPMX19_02967 0.56 -0.9
226,750 + MPMX19_02967 0.56 -0.6
226,750 + MPMX19_02967 0.56 -1.0
226,751 - MPMX19_02967 0.56 -0.9
226,751 - MPMX19_02967 0.56 +0.7
226,751 - MPMX19_02967 0.56 -2.5
226,751 - MPMX19_02967 0.56 -0.7
226,751 - MPMX19_02967 0.56 -1.5
226,751 - MPMX19_02967 0.56 -0.7
226,751 - MPMX19_02967 0.56 +0.3
226,751 - MPMX19_02967 0.56 -1.7
226,751 - MPMX19_02967 0.56 +0.4
226,751 - MPMX19_02967 0.56 -0.4
226,780 + MPMX19_02967 0.58 -1.3
226,780 + MPMX19_02967 0.58 +0.6
226,780 + MPMX19_02967 0.58 -0.3
226,780 + MPMX19_02967 0.58 +0.5
226,780 + MPMX19_02967 0.58 -0.9
226,780 + MPMX19_02967 0.58 -0.9
226,780 + MPMX19_02967 0.58 -0.5
226,780 + MPMX19_02967 0.58 -2.1
226,781 - MPMX19_02967 0.58 -3.1
226,781 - MPMX19_02967 0.58 +0.1
226,781 - MPMX19_02967 0.58 +0.9
226,781 - MPMX19_02967 0.58 +0.9
226,781 - MPMX19_02967 0.58 -1.9
226,781 - MPMX19_02967 0.58 -1.5
226,781 - MPMX19_02967 0.58 +0.3
226,855 + MPMX19_02967 0.65 -1.1
226,855 + MPMX19_02967 0.65 -1.3
226,856 - MPMX19_02967 0.65 +0.0
226,856 - MPMX19_02967 0.65 -0.3
226,856 - MPMX19_02967 0.65 -1.4
226,856 - MPMX19_02967 0.65 -0.4
226,970 - MPMX19_02967 0.75 -2.1
226,970 - MPMX19_02967 0.75 -1.2
227,002 + MPMX19_02967 0.77 -0.1
227,003 - MPMX19_02967 0.77 -1.1
227,092 + MPMX19_02967 0.85 -0.7
227,093 - MPMX19_02967 0.85 -0.1
227,263 + -0.4
227,264 - +0.3
227,585 + -0.9
227,585 + -0.6
227,585 + +0.9
227,585 + -1.6
227,585 + -0.9
227,585 + -1.7
227,585 + +0.1
227,585 + -0.4
227,585 + +1.1
227,585 + -1.6
227,585 + -0.1
227,585 + +0.5
227,585 + +0.4
227,585 + -0.7
227,585 + -0.3
227,585 + -0.7
227,585 + -0.4
227,585 + -1.3
227,585 + +0.4
227,585 + +0.0
227,586 - -1.3
227,586 - -0.8
227,586 - -0.7
227,586 - +1.4
227,586 - +1.1
227,586 - -0.8
227,586 - +0.1
227,586 - +2.0
227,586 - -0.2
227,586 - +1.1
227,586 - +0.1
227,586 - -1.1
227,586 - -0.1
227,801 + MPMX19_02968 0.14 -0.1
227,801 + MPMX19_02968 0.14 -0.4
227,801 + MPMX19_02968 0.14 -2.4
227,802 - MPMX19_02968 0.14 -0.5
227,802 - MPMX19_02968 0.14 -1.5
227,813 + MPMX19_02968 0.14 -1.7
227,813 + MPMX19_02968 0.14 +0.1
227,813 + MPMX19_02968 0.14 +0.6
227,813 + MPMX19_02968 0.14 +0.6
227,813 + MPMX19_02968 0.14 -1.3
227,813 + MPMX19_02968 0.14 -1.0
227,813 + MPMX19_02968 0.14 -1.0
227,813 + MPMX19_02968 0.14 +0.3
227,814 - MPMX19_02968 0.15 -1.5
227,814 - MPMX19_02968 0.15 -0.3
227,814 - MPMX19_02968 0.15 +0.9
227,814 - MPMX19_02968 0.15 -0.9
227,814 - MPMX19_02968 0.15 -0.6
227,814 - MPMX19_02968 0.15 -0.6
227,814 - MPMX19_02968 0.15 -0.4
227,825 + MPMX19_02968 0.15 -1.3
227,825 + MPMX19_02968 0.15 -1.7
227,826 - MPMX19_02968 0.15 -2.0
227,826 - MPMX19_02968 0.15 +1.4
227,826 - MPMX19_02968 0.15 +0.3
227,826 - MPMX19_02968 0.15 -1.5
227,826 - MPMX19_02968 0.15 -0.8
227,903 + MPMX19_02968 0.17 -0.7
227,903 + MPMX19_02968 0.17 -1.7
227,903 + MPMX19_02968 0.17 -0.4
227,904 - MPMX19_02968 0.17 -0.6
228,055 - MPMX19_02968 0.22 -0.4
228,055 - MPMX19_02968 0.22 +1.0
228,055 - MPMX19_02968 0.22 -0.7
228,182 + MPMX19_02968 0.26 -0.1
228,182 + MPMX19_02968 0.26 -1.4
228,182 + MPMX19_02968 0.26 -1.4
228,182 + MPMX19_02968 0.26 -2.7
228,183 - MPMX19_02968 0.26 -0.8
228,183 - MPMX19_02968 0.26 +0.9
228,183 - MPMX19_02968 0.26 +0.1

Or see this region's nucleotide sequence