Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02817 and MPMX19_02818 are separated by 141 nucleotides MPMX19_02818 and MPMX19_02819 are separated by 3 nucleotides
MPMX19_02817: MPMX19_02817 - Serine 3-dehydrogenase, at 53,577 to 54,365
_02817
MPMX19_02818: MPMX19_02818 - hypothetical protein, at 54,507 to 55,979
_02818
MPMX19_02819: MPMX19_02819 - hypothetical protein, at 55,983 to 56,843
_02819
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 54.052 kb on - strand, within MPMX19_02817 at 54.052 kb on - strand, within MPMX19_02817 at 54.211 kb on - strand, within MPMX19_02817 at 54.211 kb on - strand, within MPMX19_02817 at 54.437 kb on + strand at 54.438 kb on - strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.638 kb on + strand at 54.638 kb on + strand at 54.639 kb on - strand at 54.639 kb on - strand at 54.639 kb on - strand at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818 at 55.884 kb on + strand at 55.885 kb on - strand at 55.885 kb on - strand at 55.885 kb on - strand at 55.885 kb on - strand at 55.978 kb on - strand at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.922 kb on + strand at 56.923 kb on - strand at 56.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 53,534 + -1.3 53,534 + -1.4 53,534 + -1.6 53,534 + -2.0 53,534 + -0.3 53,534 + -1.4 53,535 - -0.4 53,535 - +0.1 53,535 - -1.1 53,535 - -1.7 53,535 - -1.1 53,535 - -0.4 53,535 - -1.4 53,536 + -0.6 53,536 + +0.1 53,536 + +1.1 53,536 + -2.5 53,536 + +0.9 53,536 + -1.6 53,537 - +0.7 53,537 - -0.6 53,537 - -0.1 53,537 - -0.6 53,537 - -0.3 53,537 - +0.9 53,537 - -0.5 54,052 - MPMX19_02817 0.60 -0.9 54,052 - MPMX19_02817 0.60 -0.3 54,211 - MPMX19_02817 0.80 +0.9 54,211 - MPMX19_02817 0.80 -1.7 54,437 + -0.7 54,438 - -1.5 54,524 + -0.6 54,524 + -2.4 54,524 + -0.5 54,524 + +1.1 54,524 + -0.6 54,524 + -1.1 54,524 + +3.0 54,524 + -0.4 54,524 + -1.5 54,524 + -0.7 54,524 + -1.4 54,524 + -0.9 54,525 - -1.0 54,525 - +1.0 54,525 - +1.1 54,525 - -1.7 54,525 - -0.8 54,525 - +1.1 54,525 - -1.4 54,525 - +0.3 54,525 - +1.1 54,525 - +1.1 54,525 - +0.3 54,525 - -1.9 54,638 + -0.1 54,638 + +0.6 54,639 - -0.0 54,639 - +0.1 54,639 - +1.2 55,317 + MPMX19_02818 0.55 -0.6 55,317 + MPMX19_02818 0.55 -0.3 55,317 + MPMX19_02818 0.55 -1.1 55,884 + -1.5 55,885 - -0.3 55,885 - -1.1 55,885 - -0.1 55,885 - -1.4 55,978 - +0.4 56,197 + MPMX19_02819 0.25 -0.9 56,197 + MPMX19_02819 0.25 +1.2 56,197 + MPMX19_02819 0.25 -2.9 56,197 + MPMX19_02819 0.25 -0.4 56,197 + MPMX19_02819 0.25 -0.8 56,198 - MPMX19_02819 0.25 -1.4 56,198 - MPMX19_02819 0.25 -0.2 56,198 - MPMX19_02819 0.25 +0.9 56,198 - MPMX19_02819 0.25 -1.3 56,198 - MPMX19_02819 0.25 -0.1 56,198 - MPMX19_02819 0.25 +1.0 56,198 - MPMX19_02819 0.25 +1.3 56,198 - MPMX19_02819 0.25 +0.3 56,198 - MPMX19_02819 0.25 -1.5 56,353 + MPMX19_02819 0.43 -0.1 56,353 + MPMX19_02819 0.43 -2.0 56,353 + MPMX19_02819 0.43 -0.6 56,353 + MPMX19_02819 0.43 -1.1 56,353 + MPMX19_02819 0.43 -2.5 56,922 + -1.1 56,923 - -0.1 56,959 - -0.3
Or see this region's nucleotide sequence