Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02739

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02738 and MPMX19_02739 are separated by 52 nucleotidesMPMX19_02739 and MPMX19_02740 are separated by 164 nucleotidesMPMX19_02740 and MPMX19_02741 are separated by 305 nucleotidesMPMX19_02741 and MPMX19_02742 are separated by 2 nucleotides MPMX19_02738: MPMX19_02738 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, at 2,882,660 to 2,883,706 _02738 MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129 _02739 MPMX19_02740: MPMX19_02740 - tRNA-Ala, at 2,885,294 to 2,885,369 _02740 MPMX19_02741: MPMX19_02741 - hypothetical protein, at 2,885,675 to 2,885,959 _02741 MPMX19_02742: MPMX19_02742 - hypothetical protein, at 2,885,962 to 2,886,315 _02742 Position (kb) 2883 2884 2885 2886Strain fitness (log2 ratio) -2 -1 0 1at 2883.714 kb on + strandat 2883.714 kb on + strandat 2885.259 kb on - strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.517 kb on + strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.518 kb on - strandat 2885.587 kb on + strandat 2885.587 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.593 kb on + strandat 2885.942 kb on + strandat 2885.942 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
2,883,714 + -0.4
2,883,714 + -1.7
2,885,259 - -2.3
2,885,517 + -0.6
2,885,517 + +0.6
2,885,517 + -0.2
2,885,517 + +1.0
2,885,517 + -1.3
2,885,517 + +0.1
2,885,517 + +0.3
2,885,517 + -0.7
2,885,518 - -0.3
2,885,518 - +0.5
2,885,518 - -0.5
2,885,518 - -0.4
2,885,518 - +0.4
2,885,518 - +1.0
2,885,518 - -0.1
2,885,518 - +0.8
2,885,587 + +0.4
2,885,587 + -1.8
2,885,593 + +0.6
2,885,593 + +0.1
2,885,593 + -1.0
2,885,593 + -1.2
2,885,593 + +0.6
2,885,593 + +0.5
2,885,593 + -2.0
2,885,942 + -0.0
2,885,942 + -0.5

Or see this region's nucleotide sequence