Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02673

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02672 and MPMX19_02673 are separated by 183 nucleotidesMPMX19_02673 and MPMX19_02674 are separated by 52 nucleotides MPMX19_02672: MPMX19_02672 - Ubiquinone biosynthesis O-methyltransferase, at 2,791,042 to 2,791,836 _02672 MPMX19_02673: MPMX19_02673 - Aspartokinase, at 2,792,020 to 2,793,255 _02673 MPMX19_02674: MPMX19_02674 - NADH:quinone reductase, at 2,793,308 to 2,794,393 _02674 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -1 0 1 2at 2791.850 kb on - strandat 2793.326 kb on + strandat 2793.326 kb on + strandat 2793.326 kb on + strandat 2793.327 kb on - strandat 2793.327 kb on - strandat 2793.327 kb on - strandat 2793.327 kb on - strandat 2793.541 kb on + strand, within MPMX19_02674at 2793.541 kb on + strand, within MPMX19_02674at 2793.541 kb on + strand, within MPMX19_02674at 2793.541 kb on + strand, within MPMX19_02674at 2793.542 kb on - strand, within MPMX19_02674at 2793.902 kb on + strand, within MPMX19_02674at 2793.902 kb on + strand, within MPMX19_02674at 2793.903 kb on - strand, within MPMX19_02674at 2793.903 kb on - strand, within MPMX19_02674at 2793.903 kb on - strand, within MPMX19_02674

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,791,850 - -0.3
2,793,326 + +0.4
2,793,326 + -0.9
2,793,326 + -1.0
2,793,327 - +0.8
2,793,327 - +2.4
2,793,327 - +0.8
2,793,327 - +1.1
2,793,541 + MPMX19_02674 0.21 -0.2
2,793,541 + MPMX19_02674 0.21 -1.3
2,793,541 + MPMX19_02674 0.21 +0.8
2,793,541 + MPMX19_02674 0.21 +0.6
2,793,542 - MPMX19_02674 0.22 +0.4
2,793,902 + MPMX19_02674 0.55 +0.4
2,793,902 + MPMX19_02674 0.55 +0.8
2,793,903 - MPMX19_02674 0.55 +1.7
2,793,903 - MPMX19_02674 0.55 -1.0
2,793,903 - MPMX19_02674 0.55 +0.4

Or see this region's nucleotide sequence