Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02477

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02475 and MPMX19_02476 are separated by 78 nucleotidesMPMX19_02476 and MPMX19_02477 are separated by 94 nucleotidesMPMX19_02477 and MPMX19_02478 are separated by 13 nucleotidesMPMX19_02478 and MPMX19_02479 are separated by 3 nucleotides MPMX19_02475: MPMX19_02475 - HTH-type transcriptional regulator ArgP, at 2,595,997 to 2,596,896 _02475 MPMX19_02476: MPMX19_02476 - hypothetical protein, at 2,596,975 to 2,597,343 _02476 MPMX19_02477: MPMX19_02477 - Tryptophan--tRNA ligase, at 2,597,438 to 2,598,436 _02477 MPMX19_02478: MPMX19_02478 - Pyrrolidone-carboxylate peptidase, at 2,598,450 to 2,599,127 _02478 MPMX19_02479: MPMX19_02479 - hypothetical protein, at 2,599,131 to 2,599,505 _02479 Position (kb) 2597 2598 2599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2596.565 kb on + strand, within MPMX19_02475at 2596.565 kb on + strand, within MPMX19_02475at 2596.565 kb on + strand, within MPMX19_02475at 2596.565 kb on + strand, within MPMX19_02475at 2596.566 kb on - strand, within MPMX19_02475at 2596.566 kb on - strand, within MPMX19_02475at 2596.566 kb on - strand, within MPMX19_02475at 2596.566 kb on - strand, within MPMX19_02475at 2596.881 kb on + strandat 2596.882 kb on - strandat 2596.884 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.906 kb on + strandat 2596.907 kb on - strandat 2596.907 kb on - strandat 2596.933 kb on + strandat 2596.933 kb on + strandat 2596.933 kb on + strandat 2596.933 kb on + strandat 2596.933 kb on + strandat 2596.934 kb on - strandat 2596.934 kb on - strandat 2596.934 kb on - strandat 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.062 kb on + strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.063 kb on - strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.256 kb on + strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.257 kb on - strand, within MPMX19_02476at 2597.341 kb on + strandat 2597.341 kb on + strandat 2597.341 kb on + strandat 2597.400 kb on + strandat 2597.400 kb on + strandat 2597.400 kb on + strandat 2597.400 kb on + strandat 2598.434 kb on + strandat 2598.434 kb on + strandat 2598.434 kb on + strandat 2598.435 kb on - strandat 2598.440 kb on + strandat 2598.440 kb on + strandat 2598.441 kb on - strandat 2598.441 kb on - strandat 2598.441 kb on - strandat 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.633 kb on + strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.634 kb on - strand, within MPMX19_02478at 2598.705 kb on + strand, within MPMX19_02478at 2598.705 kb on + strand, within MPMX19_02478at 2598.706 kb on - strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.723 kb on + strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.724 kb on - strand, within MPMX19_02478at 2598.832 kb on - strand, within MPMX19_02478at 2598.832 kb on - strand, within MPMX19_02478at 2598.939 kb on + strand, within MPMX19_02478at 2598.939 kb on + strand, within MPMX19_02478at 2598.940 kb on - strand, within MPMX19_02478at 2598.940 kb on - strand, within MPMX19_02478at 2598.940 kb on - strand, within MPMX19_02478at 2598.953 kb on + strand, within MPMX19_02478at 2598.953 kb on + strand, within MPMX19_02478at 2598.954 kb on - strand, within MPMX19_02478at 2598.954 kb on - strand, within MPMX19_02478at 2598.954 kb on - strand, within MPMX19_02478at 2598.954 kb on - strand, within MPMX19_02478at 2598.954 kb on - strand, within MPMX19_02478at 2598.954 kb on - strand, within MPMX19_02478at 2598.984 kb on + strand, within MPMX19_02478at 2598.985 kb on - strand, within MPMX19_02478at 2598.985 kb on - strand, within MPMX19_02478at 2599.121 kb on + strandat 2599.121 kb on + strandat 2599.121 kb on + strandat 2599.121 kb on + strandat 2599.121 kb on + strandat 2599.122 kb on - strandat 2599.122 kb on - strandat 2599.122 kb on - strandat 2599.122 kb on - strandat 2599.122 kb on - strandat 2599.122 kb on - strandat 2599.122 kb on - strandat 2599.125 kb on + strandat 2599.125 kb on + strandat 2599.125 kb on + strandat 2599.126 kb on - strandat 2599.126 kb on - strandat 2599.126 kb on - strandat 2599.126 kb on - strandat 2599.126 kb on - strandat 2599.415 kb on - strand, within MPMX19_02479at 2599.415 kb on - strand, within MPMX19_02479at 2599.415 kb on - strand, within MPMX19_02479

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,596,565 + MPMX19_02475 0.63 +0.8
2,596,565 + MPMX19_02475 0.63 +0.6
2,596,565 + MPMX19_02475 0.63 -0.2
2,596,565 + MPMX19_02475 0.63 -1.0
2,596,566 - MPMX19_02475 0.63 -0.2
2,596,566 - MPMX19_02475 0.63 +0.6
2,596,566 - MPMX19_02475 0.63 +1.4
2,596,566 - MPMX19_02475 0.63 -1.7
2,596,881 + -2.0
2,596,882 - -0.5
2,596,884 + -0.4
2,596,906 + +2.4
2,596,906 + -2.0
2,596,906 + -1.3
2,596,906 + -1.3
2,596,906 + -0.8
2,596,906 + +0.1
2,596,906 + -1.2
2,596,906 + -2.2
2,596,907 - +0.3
2,596,907 - -0.1
2,596,933 + -0.6
2,596,933 + +0.6
2,596,933 + -0.5
2,596,933 + -2.2
2,596,933 + +1.3
2,596,934 - -1.1
2,596,934 - +0.4
2,596,934 - -0.7
2,597,062 + MPMX19_02476 0.24 -0.2
2,597,062 + MPMX19_02476 0.24 -2.3
2,597,062 + MPMX19_02476 0.24 -0.3
2,597,062 + MPMX19_02476 0.24 -0.4
2,597,062 + MPMX19_02476 0.24 -1.7
2,597,062 + MPMX19_02476 0.24 -1.4
2,597,062 + MPMX19_02476 0.24 +0.2
2,597,062 + MPMX19_02476 0.24 -1.7
2,597,062 + MPMX19_02476 0.24 -0.4
2,597,062 + MPMX19_02476 0.24 -0.4
2,597,062 + MPMX19_02476 0.24 +0.1
2,597,062 + MPMX19_02476 0.24 -0.9
2,597,062 + MPMX19_02476 0.24 -0.3
2,597,062 + MPMX19_02476 0.24 +0.0
2,597,062 + MPMX19_02476 0.24 -0.5
2,597,062 + MPMX19_02476 0.24 -1.2
2,597,062 + MPMX19_02476 0.24 -1.1
2,597,062 + MPMX19_02476 0.24 +0.2
2,597,062 + MPMX19_02476 0.24 +0.1
2,597,062 + MPMX19_02476 0.24 -0.7
2,597,063 - MPMX19_02476 0.24 -1.0
2,597,063 - MPMX19_02476 0.24 +0.3
2,597,063 - MPMX19_02476 0.24 +0.4
2,597,063 - MPMX19_02476 0.24 +0.0
2,597,063 - MPMX19_02476 0.24 -0.8
2,597,063 - MPMX19_02476 0.24 -1.8
2,597,063 - MPMX19_02476 0.24 -0.6
2,597,063 - MPMX19_02476 0.24 -2.0
2,597,063 - MPMX19_02476 0.24 -0.4
2,597,063 - MPMX19_02476 0.24 -0.7
2,597,063 - MPMX19_02476 0.24 -0.4
2,597,063 - MPMX19_02476 0.24 -0.8
2,597,063 - MPMX19_02476 0.24 -0.5
2,597,063 - MPMX19_02476 0.24 +0.2
2,597,063 - MPMX19_02476 0.24 -1.3
2,597,063 - MPMX19_02476 0.24 -1.0
2,597,063 - MPMX19_02476 0.24 -0.5
2,597,063 - MPMX19_02476 0.24 -1.2
2,597,063 - MPMX19_02476 0.24 -1.2
2,597,063 - MPMX19_02476 0.24 -0.8
2,597,063 - MPMX19_02476 0.24 -1.7
2,597,063 - MPMX19_02476 0.24 -1.4
2,597,063 - MPMX19_02476 0.24 +0.3
2,597,063 - MPMX19_02476 0.24 -2.4
2,597,063 - MPMX19_02476 0.24 -1.2
2,597,063 - MPMX19_02476 0.24 -0.6
2,597,063 - MPMX19_02476 0.24 -0.6
2,597,063 - MPMX19_02476 0.24 -0.6
2,597,063 - MPMX19_02476 0.24 -1.2
2,597,063 - MPMX19_02476 0.24 +0.6
2,597,256 + MPMX19_02476 0.76 -2.4
2,597,256 + MPMX19_02476 0.76 -0.3
2,597,256 + MPMX19_02476 0.76 -0.1
2,597,256 + MPMX19_02476 0.76 -0.6
2,597,256 + MPMX19_02476 0.76 -2.1
2,597,256 + MPMX19_02476 0.76 -1.2
2,597,256 + MPMX19_02476 0.76 -0.9
2,597,256 + MPMX19_02476 0.76 +1.4
2,597,257 - MPMX19_02476 0.76 +0.8
2,597,257 - MPMX19_02476 0.76 -2.8
2,597,257 - MPMX19_02476 0.76 -1.2
2,597,257 - MPMX19_02476 0.76 -2.3
2,597,257 - MPMX19_02476 0.76 +0.4
2,597,257 - MPMX19_02476 0.76 -0.0
2,597,257 - MPMX19_02476 0.76 -0.7
2,597,257 - MPMX19_02476 0.76 -0.2
2,597,257 - MPMX19_02476 0.76 -0.2
2,597,257 - MPMX19_02476 0.76 -1.0
2,597,257 - MPMX19_02476 0.76 +0.1
2,597,257 - MPMX19_02476 0.76 -0.7
2,597,257 - MPMX19_02476 0.76 +0.3
2,597,257 - MPMX19_02476 0.76 +0.7
2,597,257 - MPMX19_02476 0.76 -0.7
2,597,257 - MPMX19_02476 0.76 -2.2
2,597,341 + -2.0
2,597,341 + -1.1
2,597,341 + -0.6
2,597,400 + -0.6
2,597,400 + -0.7
2,597,400 + -0.7
2,597,400 + -0.4
2,598,434 + +0.0
2,598,434 + -0.5
2,598,434 + -1.2
2,598,435 - +0.1
2,598,440 + -0.9
2,598,440 + +0.4
2,598,441 - -0.1
2,598,441 - -1.2
2,598,441 - +0.3
2,598,633 + MPMX19_02478 0.27 -1.5
2,598,633 + MPMX19_02478 0.27 +0.8
2,598,633 + MPMX19_02478 0.27 -1.5
2,598,633 + MPMX19_02478 0.27 +0.3
2,598,633 + MPMX19_02478 0.27 -0.7
2,598,633 + MPMX19_02478 0.27 -0.6
2,598,633 + MPMX19_02478 0.27 -1.0
2,598,633 + MPMX19_02478 0.27 +0.8
2,598,633 + MPMX19_02478 0.27 -0.9
2,598,633 + MPMX19_02478 0.27 -1.4
2,598,633 + MPMX19_02478 0.27 +1.4
2,598,633 + MPMX19_02478 0.27 -0.7
2,598,633 + MPMX19_02478 0.27 -1.7
2,598,634 - MPMX19_02478 0.27 -0.8
2,598,634 - MPMX19_02478 0.27 -1.3
2,598,634 - MPMX19_02478 0.27 -1.0
2,598,634 - MPMX19_02478 0.27 +0.4
2,598,634 - MPMX19_02478 0.27 +0.4
2,598,634 - MPMX19_02478 0.27 +1.1
2,598,634 - MPMX19_02478 0.27 -0.9
2,598,634 - MPMX19_02478 0.27 -2.0
2,598,634 - MPMX19_02478 0.27 -0.4
2,598,634 - MPMX19_02478 0.27 -1.4
2,598,634 - MPMX19_02478 0.27 -1.3
2,598,634 - MPMX19_02478 0.27 -1.6
2,598,634 - MPMX19_02478 0.27 +0.4
2,598,634 - MPMX19_02478 0.27 -1.2
2,598,634 - MPMX19_02478 0.27 +0.8
2,598,634 - MPMX19_02478 0.27 +0.4
2,598,634 - MPMX19_02478 0.27 -1.4
2,598,634 - MPMX19_02478 0.27 -0.4
2,598,634 - MPMX19_02478 0.27 -0.7
2,598,634 - MPMX19_02478 0.27 -0.5
2,598,634 - MPMX19_02478 0.27 -0.7
2,598,634 - MPMX19_02478 0.27 -1.0
2,598,634 - MPMX19_02478 0.27 -1.4
2,598,705 + MPMX19_02478 0.38 -0.7
2,598,705 + MPMX19_02478 0.38 -0.6
2,598,706 - MPMX19_02478 0.38 -0.2
2,598,723 + MPMX19_02478 0.40 -0.5
2,598,723 + MPMX19_02478 0.40 -1.3
2,598,723 + MPMX19_02478 0.40 +0.0
2,598,723 + MPMX19_02478 0.40 -2.0
2,598,723 + MPMX19_02478 0.40 -0.7
2,598,723 + MPMX19_02478 0.40 +0.4
2,598,723 + MPMX19_02478 0.40 -1.5
2,598,723 + MPMX19_02478 0.40 -0.3
2,598,724 - MPMX19_02478 0.40 -0.0
2,598,724 - MPMX19_02478 0.40 -1.7
2,598,724 - MPMX19_02478 0.40 -0.5
2,598,724 - MPMX19_02478 0.40 -1.0
2,598,724 - MPMX19_02478 0.40 -1.1
2,598,724 - MPMX19_02478 0.40 -0.2
2,598,724 - MPMX19_02478 0.40 -1.5
2,598,724 - MPMX19_02478 0.40 +0.1
2,598,724 - MPMX19_02478 0.40 -0.7
2,598,724 - MPMX19_02478 0.40 -0.5
2,598,724 - MPMX19_02478 0.40 +0.3
2,598,724 - MPMX19_02478 0.40 -1.7
2,598,724 - MPMX19_02478 0.40 +0.8
2,598,832 - MPMX19_02478 0.56 -2.3
2,598,832 - MPMX19_02478 0.56 -1.0
2,598,939 + MPMX19_02478 0.72 -0.4
2,598,939 + MPMX19_02478 0.72 +0.6
2,598,940 - MPMX19_02478 0.72 +1.2
2,598,940 - MPMX19_02478 0.72 +0.3
2,598,940 - MPMX19_02478 0.72 -0.9
2,598,953 + MPMX19_02478 0.74 -1.0
2,598,953 + MPMX19_02478 0.74 +0.2
2,598,954 - MPMX19_02478 0.74 +1.3
2,598,954 - MPMX19_02478 0.74 -1.4
2,598,954 - MPMX19_02478 0.74 -1.4
2,598,954 - MPMX19_02478 0.74 -1.0
2,598,954 - MPMX19_02478 0.74 -1.4
2,598,954 - MPMX19_02478 0.74 -3.6
2,598,984 + MPMX19_02478 0.79 -0.0
2,598,985 - MPMX19_02478 0.79 -0.6
2,598,985 - MPMX19_02478 0.79 -0.6
2,599,121 + +0.8
2,599,121 + -0.4
2,599,121 + +0.2
2,599,121 + +0.3
2,599,121 + -0.4
2,599,122 - +0.1
2,599,122 - -0.1
2,599,122 - -2.0
2,599,122 - -0.2
2,599,122 - -1.7
2,599,122 - -2.2
2,599,122 - -1.3
2,599,125 + -0.6
2,599,125 + -0.8
2,599,125 + -0.4
2,599,126 - -0.2
2,599,126 - -0.6
2,599,126 - -0.6
2,599,126 - +0.1
2,599,126 - -1.5
2,599,415 - MPMX19_02479 0.76 +1.4
2,599,415 - MPMX19_02479 0.76 -0.4
2,599,415 - MPMX19_02479 0.76 +0.1

Or see this region's nucleotide sequence