Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02231 and MPMX19_02232 are separated by 190 nucleotides MPMX19_02232 and MPMX19_02233 are separated by 4 nucleotides MPMX19_02233 and MPMX19_02234 are separated by 402 nucleotides MPMX19_02234 and MPMX19_02235 are separated by 147 nucleotides
MPMX19_02231: MPMX19_02231 - 30S ribosomal protein S1, at 2,348,827 to 2,350,533
_02231
MPMX19_02232: MPMX19_02232 - Cytidylate kinase, at 2,350,724 to 2,351,422
_02232
MPMX19_02233: MPMX19_02233 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,351,427 to 2,352,776
_02233
MPMX19_02234: MPMX19_02234 - hypothetical protein, at 2,353,179 to 2,353,568
_02234
MPMX19_02235: MPMX19_02235 - tRNA-Ala, at 2,353,716 to 2,353,791
_02235
Position (kb)
2351
2352
2353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2352.827 kb on - strand at 2352.827 kb on - strand at 2352.827 kb on - strand at 2352.827 kb on - strand at 2352.827 kb on - strand at 2352.827 kb on - strand at 2352.998 kb on + strand at 2352.998 kb on + strand at 2352.998 kb on + strand at 2352.998 kb on + strand at 2352.999 kb on - strand at 2352.999 kb on - strand at 2353.006 kb on + strand at 2353.006 kb on + strand at 2353.006 kb on + strand at 2353.006 kb on + strand at 2353.006 kb on + strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.007 kb on - strand at 2353.022 kb on + strand at 2353.022 kb on + strand at 2353.022 kb on + strand at 2353.022 kb on + strand at 2353.023 kb on - strand at 2353.023 kb on - strand at 2353.023 kb on - strand at 2353.049 kb on - strand at 2353.233 kb on + strand, within MPMX19_02234 at 2353.233 kb on + strand, within MPMX19_02234 at 2353.233 kb on + strand, within MPMX19_02234 at 2353.234 kb on - strand, within MPMX19_02234 at 2353.234 kb on - strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.236 kb on + strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.237 kb on - strand, within MPMX19_02234 at 2353.664 kb on + strand at 2353.664 kb on + strand at 2353.665 kb on - strand at 2353.665 kb on - strand at 2353.667 kb on + strand at 2353.667 kb on + strand at 2353.668 kb on - strand at 2353.668 kb on - strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.713 kb on + strand at 2353.714 kb on - strand at 2353.724 kb on - strand, within MPMX19_02235 at 2353.724 kb on - strand, within MPMX19_02235 at 2353.743 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235 at 2353.756 kb on + strand, within MPMX19_02235
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 2,352,827 - -1.6 2,352,827 - -0.6 2,352,827 - -1.4 2,352,827 - -1.4 2,352,827 - +0.6 2,352,827 - +2.4 2,352,998 + -1.8 2,352,998 + -0.3 2,352,998 + -1.1 2,352,998 + -1.7 2,352,999 - -0.3 2,352,999 - -1.1 2,353,006 + -1.4 2,353,006 + +1.8 2,353,006 + -0.9 2,353,006 + -1.2 2,353,006 + -0.8 2,353,007 - -1.1 2,353,007 - +0.1 2,353,007 - -1.7 2,353,007 - -1.6 2,353,007 - -0.0 2,353,007 - -0.7 2,353,007 - -1.3 2,353,007 - -0.3 2,353,007 - -0.0 2,353,007 - -1.2 2,353,022 + -2.7 2,353,022 + +0.6 2,353,022 + -1.2 2,353,022 + -0.3 2,353,023 - -1.2 2,353,023 - -0.8 2,353,023 - -0.6 2,353,049 - -1.6 2,353,233 + MPMX19_02234 0.14 -0.8 2,353,233 + MPMX19_02234 0.14 -1.1 2,353,233 + MPMX19_02234 0.14 -0.8 2,353,234 - MPMX19_02234 0.14 -0.9 2,353,234 - MPMX19_02234 0.14 -1.8 2,353,236 + MPMX19_02234 0.15 -0.5 2,353,236 + MPMX19_02234 0.15 -0.4 2,353,236 + MPMX19_02234 0.15 -1.1 2,353,236 + MPMX19_02234 0.15 -1.5 2,353,236 + MPMX19_02234 0.15 -1.9 2,353,236 + MPMX19_02234 0.15 -1.2 2,353,236 + MPMX19_02234 0.15 -0.9 2,353,236 + MPMX19_02234 0.15 -1.6 2,353,236 + MPMX19_02234 0.15 +0.2 2,353,236 + MPMX19_02234 0.15 -1.2 2,353,236 + MPMX19_02234 0.15 +0.8 2,353,237 - MPMX19_02234 0.15 -0.9 2,353,237 - MPMX19_02234 0.15 -1.5 2,353,237 - MPMX19_02234 0.15 -0.4 2,353,237 - MPMX19_02234 0.15 -0.3 2,353,237 - MPMX19_02234 0.15 -2.4 2,353,237 - MPMX19_02234 0.15 -0.6 2,353,237 - MPMX19_02234 0.15 -1.9 2,353,237 - MPMX19_02234 0.15 -1.1 2,353,237 - MPMX19_02234 0.15 -0.3 2,353,237 - MPMX19_02234 0.15 -0.8 2,353,237 - MPMX19_02234 0.15 -0.1 2,353,664 + -1.6 2,353,664 + -0.4 2,353,665 - -1.4 2,353,665 - -0.3 2,353,667 + -1.7 2,353,667 + +0.9 2,353,668 - -1.1 2,353,668 - -0.8 2,353,713 + -1.2 2,353,713 + -1.8 2,353,713 + -2.1 2,353,713 + -1.6 2,353,713 + -1.6 2,353,713 + -1.0 2,353,713 + -0.1 2,353,713 + -0.2 2,353,713 + -0.9 2,353,714 - -1.2 2,353,724 - MPMX19_02235 0.11 -0.6 2,353,724 - MPMX19_02235 0.11 -0.4 2,353,743 + MPMX19_02235 0.36 -1.3 2,353,756 + MPMX19_02235 0.53 -1.2 2,353,756 + MPMX19_02235 0.53 -1.5 2,353,756 + MPMX19_02235 0.53 -0.4 2,353,756 + MPMX19_02235 0.53 -1.1 2,353,756 + MPMX19_02235 0.53 -1.1 2,353,756 + MPMX19_02235 0.53 -3.1 2,353,756 + MPMX19_02235 0.53 -1.1 2,353,756 + MPMX19_02235 0.53 -0.3 2,353,756 + MPMX19_02235 0.53 -1.7 2,353,756 + MPMX19_02235 0.53 +0.1 2,353,756 + MPMX19_02235 0.53 -0.6 2,353,756 + MPMX19_02235 0.53 -2.4
Or see this region's nucleotide sequence