Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02233

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02231 and MPMX19_02232 are separated by 190 nucleotidesMPMX19_02232 and MPMX19_02233 are separated by 4 nucleotidesMPMX19_02233 and MPMX19_02234 are separated by 402 nucleotidesMPMX19_02234 and MPMX19_02235 are separated by 147 nucleotides MPMX19_02231: MPMX19_02231 - 30S ribosomal protein S1, at 2,348,827 to 2,350,533 _02231 MPMX19_02232: MPMX19_02232 - Cytidylate kinase, at 2,350,724 to 2,351,422 _02232 MPMX19_02233: MPMX19_02233 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,351,427 to 2,352,776 _02233 MPMX19_02234: MPMX19_02234 - hypothetical protein, at 2,353,179 to 2,353,568 _02234 MPMX19_02235: MPMX19_02235 - tRNA-Ala, at 2,353,716 to 2,353,791 _02235 Position (kb) 2351 2352 2353Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2352.827 kb on - strandat 2352.827 kb on - strandat 2352.827 kb on - strandat 2352.827 kb on - strandat 2352.827 kb on - strandat 2352.827 kb on - strandat 2352.998 kb on + strandat 2352.998 kb on + strandat 2352.998 kb on + strandat 2352.998 kb on + strandat 2352.999 kb on - strandat 2352.999 kb on - strandat 2353.006 kb on + strandat 2353.006 kb on + strandat 2353.006 kb on + strandat 2353.006 kb on + strandat 2353.006 kb on + strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.007 kb on - strandat 2353.022 kb on + strandat 2353.022 kb on + strandat 2353.022 kb on + strandat 2353.022 kb on + strandat 2353.023 kb on - strandat 2353.023 kb on - strandat 2353.023 kb on - strandat 2353.049 kb on - strandat 2353.233 kb on + strand, within MPMX19_02234at 2353.233 kb on + strand, within MPMX19_02234at 2353.233 kb on + strand, within MPMX19_02234at 2353.234 kb on - strand, within MPMX19_02234at 2353.234 kb on - strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.236 kb on + strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.237 kb on - strand, within MPMX19_02234at 2353.664 kb on + strandat 2353.664 kb on + strandat 2353.665 kb on - strandat 2353.665 kb on - strandat 2353.667 kb on + strandat 2353.667 kb on + strandat 2353.668 kb on - strandat 2353.668 kb on - strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.713 kb on + strandat 2353.714 kb on - strandat 2353.724 kb on - strand, within MPMX19_02235at 2353.724 kb on - strand, within MPMX19_02235at 2353.743 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235at 2353.756 kb on + strand, within MPMX19_02235

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,352,827 - -1.6
2,352,827 - -0.6
2,352,827 - -1.4
2,352,827 - -1.4
2,352,827 - +0.6
2,352,827 - +2.4
2,352,998 + -1.8
2,352,998 + -0.3
2,352,998 + -1.1
2,352,998 + -1.7
2,352,999 - -0.3
2,352,999 - -1.1
2,353,006 + -1.4
2,353,006 + +1.8
2,353,006 + -0.9
2,353,006 + -1.2
2,353,006 + -0.8
2,353,007 - -1.1
2,353,007 - +0.1
2,353,007 - -1.7
2,353,007 - -1.6
2,353,007 - -0.0
2,353,007 - -0.7
2,353,007 - -1.3
2,353,007 - -0.3
2,353,007 - -0.0
2,353,007 - -1.2
2,353,022 + -2.7
2,353,022 + +0.6
2,353,022 + -1.2
2,353,022 + -0.3
2,353,023 - -1.2
2,353,023 - -0.8
2,353,023 - -0.6
2,353,049 - -1.6
2,353,233 + MPMX19_02234 0.14 -0.8
2,353,233 + MPMX19_02234 0.14 -1.1
2,353,233 + MPMX19_02234 0.14 -0.8
2,353,234 - MPMX19_02234 0.14 -0.9
2,353,234 - MPMX19_02234 0.14 -1.8
2,353,236 + MPMX19_02234 0.15 -0.5
2,353,236 + MPMX19_02234 0.15 -0.4
2,353,236 + MPMX19_02234 0.15 -1.1
2,353,236 + MPMX19_02234 0.15 -1.5
2,353,236 + MPMX19_02234 0.15 -1.9
2,353,236 + MPMX19_02234 0.15 -1.2
2,353,236 + MPMX19_02234 0.15 -0.9
2,353,236 + MPMX19_02234 0.15 -1.6
2,353,236 + MPMX19_02234 0.15 +0.2
2,353,236 + MPMX19_02234 0.15 -1.2
2,353,236 + MPMX19_02234 0.15 +0.8
2,353,237 - MPMX19_02234 0.15 -0.9
2,353,237 - MPMX19_02234 0.15 -1.5
2,353,237 - MPMX19_02234 0.15 -0.4
2,353,237 - MPMX19_02234 0.15 -0.3
2,353,237 - MPMX19_02234 0.15 -2.4
2,353,237 - MPMX19_02234 0.15 -0.6
2,353,237 - MPMX19_02234 0.15 -1.9
2,353,237 - MPMX19_02234 0.15 -1.1
2,353,237 - MPMX19_02234 0.15 -0.3
2,353,237 - MPMX19_02234 0.15 -0.8
2,353,237 - MPMX19_02234 0.15 -0.1
2,353,664 + -1.6
2,353,664 + -0.4
2,353,665 - -1.4
2,353,665 - -0.3
2,353,667 + -1.7
2,353,667 + +0.9
2,353,668 - -1.1
2,353,668 - -0.8
2,353,713 + -1.2
2,353,713 + -1.8
2,353,713 + -2.1
2,353,713 + -1.6
2,353,713 + -1.6
2,353,713 + -1.0
2,353,713 + -0.1
2,353,713 + -0.2
2,353,713 + -0.9
2,353,714 - -1.2
2,353,724 - MPMX19_02235 0.11 -0.6
2,353,724 - MPMX19_02235 0.11 -0.4
2,353,743 + MPMX19_02235 0.36 -1.3
2,353,756 + MPMX19_02235 0.53 -1.2
2,353,756 + MPMX19_02235 0.53 -1.5
2,353,756 + MPMX19_02235 0.53 -0.4
2,353,756 + MPMX19_02235 0.53 -1.1
2,353,756 + MPMX19_02235 0.53 -1.1
2,353,756 + MPMX19_02235 0.53 -3.1
2,353,756 + MPMX19_02235 0.53 -1.1
2,353,756 + MPMX19_02235 0.53 -0.3
2,353,756 + MPMX19_02235 0.53 -1.7
2,353,756 + MPMX19_02235 0.53 +0.1
2,353,756 + MPMX19_02235 0.53 -0.6
2,353,756 + MPMX19_02235 0.53 -2.4

Or see this region's nucleotide sequence