Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02178

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02177 and MPMX19_02178 overlap by 4 nucleotidesMPMX19_02178 and MPMX19_02179 are separated by 167 nucleotides MPMX19_02177: MPMX19_02177 - Succinylornithine transaminase/acetylornithine aminotransferase, at 2,277,654 to 2,278,826 _02177 MPMX19_02178: MPMX19_02178 - Ornithine carbamoyltransferase, anabolic, at 2,278,823 to 2,279,776 _02178 MPMX19_02179: MPMX19_02179 - 33 kDa chaperonin, at 2,279,944 to 2,280,885 _02179 Position (kb) 2278 2279 2280Strain fitness (log2 ratio) -1 0 1at 2277.981 kb on + strand, within MPMX19_02177at 2277.981 kb on + strand, within MPMX19_02177at 2277.981 kb on + strand, within MPMX19_02177at 2277.981 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2277.987 kb on + strand, within MPMX19_02177at 2278.470 kb on + strand, within MPMX19_02177at 2278.470 kb on + strand, within MPMX19_02177at 2278.470 kb on + strand, within MPMX19_02177at 2278.470 kb on + strand, within MPMX19_02177at 2278.470 kb on + strand, within MPMX19_02177at 2279.860 kb on + strandat 2279.903 kb on + strandat 2279.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,277,981 + MPMX19_02177 0.28 -0.4
2,277,981 + MPMX19_02177 0.28 -1.1
2,277,981 + MPMX19_02177 0.28 -0.8
2,277,981 + MPMX19_02177 0.28 +1.4
2,277,987 + MPMX19_02177 0.28 +0.4
2,277,987 + MPMX19_02177 0.28 -0.6
2,277,987 + MPMX19_02177 0.28 +0.1
2,277,987 + MPMX19_02177 0.28 -0.4
2,277,987 + MPMX19_02177 0.28 -1.3
2,277,987 + MPMX19_02177 0.28 -0.6
2,277,987 + MPMX19_02177 0.28 +0.4
2,277,987 + MPMX19_02177 0.28 -0.4
2,277,987 + MPMX19_02177 0.28 -0.9
2,277,987 + MPMX19_02177 0.28 +0.1
2,278,470 + MPMX19_02177 0.70 +1.2
2,278,470 + MPMX19_02177 0.70 -1.1
2,278,470 + MPMX19_02177 0.70 -0.9
2,278,470 + MPMX19_02177 0.70 -0.8
2,278,470 + MPMX19_02177 0.70 -1.4
2,279,860 + +0.4
2,279,903 + -1.2
2,279,913 + -1.1

Or see this region's nucleotide sequence