Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01933

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01932 and MPMX19_01933 overlap by 11 nucleotidesMPMX19_01933 and MPMX19_01934 are separated by 5 nucleotidesMPMX19_01934 and MPMX19_01935 are separated by 22 nucleotides MPMX19_01932: MPMX19_01932 - GTPase Obg, at 2,013,412 to 2,014,719 _01932 MPMX19_01933: MPMX19_01933 - Glutamate 5-kinase, at 2,014,709 to 2,015,848 _01933 MPMX19_01934: MPMX19_01934 - Phosphorylated carbohydrates phosphatase, at 2,015,854 to 2,016,498 _01934 MPMX19_01935: MPMX19_01935 - hypothetical protein, at 2,016,521 to 2,017,099 _01935 Position (kb) 2014 2015 2016Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2014.689 kb on + strandat 2014.689 kb on + strandat 2015.899 kb on - strandat 2015.899 kb on - strandat 2015.899 kb on - strandat 2015.956 kb on + strand, within MPMX19_01934at 2015.957 kb on - strand, within MPMX19_01934at 2015.957 kb on - strand, within MPMX19_01934at 2016.019 kb on + strand, within MPMX19_01934at 2016.019 kb on + strand, within MPMX19_01934at 2016.019 kb on + strand, within MPMX19_01934at 2016.019 kb on + strand, within MPMX19_01934at 2016.019 kb on + strand, within MPMX19_01934at 2016.019 kb on + strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.020 kb on - strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.091 kb on + strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.092 kb on - strand, within MPMX19_01934at 2016.298 kb on + strand, within MPMX19_01934at 2016.298 kb on + strand, within MPMX19_01934at 2016.298 kb on + strand, within MPMX19_01934at 2016.299 kb on - strand, within MPMX19_01934at 2016.299 kb on - strand, within MPMX19_01934at 2016.299 kb on - strand, within MPMX19_01934at 2016.598 kb on - strand, within MPMX19_01935at 2016.684 kb on + strand, within MPMX19_01935at 2016.684 kb on + strand, within MPMX19_01935at 2016.684 kb on + strand, within MPMX19_01935at 2016.685 kb on - strand, within MPMX19_01935at 2016.756 kb on + strand, within MPMX19_01935at 2016.756 kb on + strand, within MPMX19_01935at 2016.756 kb on + strand, within MPMX19_01935at 2016.757 kb on - strand, within MPMX19_01935at 2016.757 kb on - strand, within MPMX19_01935at 2016.757 kb on - strand, within MPMX19_01935

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,014,689 + -0.2
2,014,689 + +0.1
2,015,899 - +2.4
2,015,899 - +0.3
2,015,899 - +0.0
2,015,956 + MPMX19_01934 0.16 -0.7
2,015,957 - MPMX19_01934 0.16 -1.1
2,015,957 - MPMX19_01934 0.16 -2.0
2,016,019 + MPMX19_01934 0.26 -1.8
2,016,019 + MPMX19_01934 0.26 +0.0
2,016,019 + MPMX19_01934 0.26 +0.7
2,016,019 + MPMX19_01934 0.26 -1.1
2,016,019 + MPMX19_01934 0.26 -1.1
2,016,019 + MPMX19_01934 0.26 -0.5
2,016,020 - MPMX19_01934 0.26 -1.0
2,016,020 - MPMX19_01934 0.26 +0.3
2,016,020 - MPMX19_01934 0.26 +0.6
2,016,020 - MPMX19_01934 0.26 +0.8
2,016,020 - MPMX19_01934 0.26 -0.7
2,016,020 - MPMX19_01934 0.26 +1.9
2,016,020 - MPMX19_01934 0.26 -1.6
2,016,091 + MPMX19_01934 0.37 -0.8
2,016,091 + MPMX19_01934 0.37 +0.0
2,016,091 + MPMX19_01934 0.37 -0.5
2,016,091 + MPMX19_01934 0.37 -2.2
2,016,091 + MPMX19_01934 0.37 -0.2
2,016,091 + MPMX19_01934 0.37 -0.2
2,016,091 + MPMX19_01934 0.37 +0.0
2,016,091 + MPMX19_01934 0.37 -3.2
2,016,091 + MPMX19_01934 0.37 -0.3
2,016,091 + MPMX19_01934 0.37 -0.8
2,016,091 + MPMX19_01934 0.37 -1.4
2,016,091 + MPMX19_01934 0.37 +1.0
2,016,091 + MPMX19_01934 0.37 -1.6
2,016,091 + MPMX19_01934 0.37 -1.3
2,016,092 - MPMX19_01934 0.37 +0.0
2,016,092 - MPMX19_01934 0.37 +0.9
2,016,092 - MPMX19_01934 0.37 -0.2
2,016,092 - MPMX19_01934 0.37 -1.0
2,016,092 - MPMX19_01934 0.37 +0.7
2,016,092 - MPMX19_01934 0.37 -1.0
2,016,092 - MPMX19_01934 0.37 +0.4
2,016,092 - MPMX19_01934 0.37 -0.5
2,016,092 - MPMX19_01934 0.37 +0.6
2,016,092 - MPMX19_01934 0.37 +1.0
2,016,298 + MPMX19_01934 0.69 -0.8
2,016,298 + MPMX19_01934 0.69 -1.2
2,016,298 + MPMX19_01934 0.69 +0.4
2,016,299 - MPMX19_01934 0.69 -2.8
2,016,299 - MPMX19_01934 0.69 -0.5
2,016,299 - MPMX19_01934 0.69 -0.9
2,016,598 - MPMX19_01935 0.13 +0.5
2,016,684 + MPMX19_01935 0.28 -0.8
2,016,684 + MPMX19_01935 0.28 -0.2
2,016,684 + MPMX19_01935 0.28 -1.3
2,016,685 - MPMX19_01935 0.28 -1.3
2,016,756 + MPMX19_01935 0.41 -0.6
2,016,756 + MPMX19_01935 0.41 -1.0
2,016,756 + MPMX19_01935 0.41 -0.8
2,016,757 - MPMX19_01935 0.41 -1.6
2,016,757 - MPMX19_01935 0.41 -1.1
2,016,757 - MPMX19_01935 0.41 +1.0

Or see this region's nucleotide sequence