Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01823

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01822 and MPMX19_01823 are separated by 126 nucleotidesMPMX19_01823 and MPMX19_01824 are separated by 11 nucleotidesMPMX19_01824 and MPMX19_01825 are separated by 4 nucleotides MPMX19_01822: MPMX19_01822 - 2-isopropylmalate synthase, at 1,903,811 to 1,905,508 _01822 MPMX19_01823: MPMX19_01823 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,905,635 to 1,906,621 _01823 MPMX19_01824: MPMX19_01824 - Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase, at 1,906,633 to 1,907,454 _01824 MPMX19_01825: MPMX19_01825 - hypothetical protein, at 1,907,459 to 1,908,592 _01825 Position (kb) 1905 1906 1907Strain fitness (log2 ratio) -2 -1 0 1 2at 1904.813 kb on + strand, within MPMX19_01822at 1904.814 kb on - strand, within MPMX19_01822at 1904.814 kb on - strand, within MPMX19_01822at 1904.814 kb on - strand, within MPMX19_01822at 1904.922 kb on - strand, within MPMX19_01822at 1904.922 kb on - strand, within MPMX19_01822at 1904.922 kb on - strand, within MPMX19_01822at 1904.922 kb on - strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.957 kb on + strand, within MPMX19_01822at 1904.958 kb on - strand, within MPMX19_01822at 1904.958 kb on - strand, within MPMX19_01822at 1904.958 kb on - strand, within MPMX19_01822at 1904.958 kb on - strand, within MPMX19_01822at 1904.958 kb on - strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.008 kb on + strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.009 kb on - strand, within MPMX19_01822at 1905.026 kb on + strand, within MPMX19_01822at 1905.146 kb on + strand, within MPMX19_01822at 1905.146 kb on + strand, within MPMX19_01822at 1905.146 kb on + strand, within MPMX19_01822at 1905.146 kb on + strand, within MPMX19_01822at 1905.146 kb on + strand, within MPMX19_01822at 1905.147 kb on - strand, within MPMX19_01822at 1905.147 kb on - strand, within MPMX19_01822at 1905.395 kb on + strandat 1905.395 kb on + strandat 1905.395 kb on + strandat 1905.395 kb on + strandat 1905.395 kb on + strandat 1905.395 kb on + strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.396 kb on - strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.566 kb on + strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.567 kb on - strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.593 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.595 kb on + strandat 1905.596 kb on - strandat 1905.613 kb on + strandat 1905.613 kb on + strandat 1905.613 kb on + strandat 1905.634 kb on + strandat 1905.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,904,813 + MPMX19_01822 0.59 -0.6
1,904,814 - MPMX19_01822 0.59 -1.1
1,904,814 - MPMX19_01822 0.59 -0.4
1,904,814 - MPMX19_01822 0.59 -0.4
1,904,922 - MPMX19_01822 0.65 -0.2
1,904,922 - MPMX19_01822 0.65 -0.4
1,904,922 - MPMX19_01822 0.65 +0.4
1,904,922 - MPMX19_01822 0.65 -0.8
1,904,957 + MPMX19_01822 0.67 +0.1
1,904,957 + MPMX19_01822 0.67 -0.4
1,904,957 + MPMX19_01822 0.67 -0.9
1,904,957 + MPMX19_01822 0.67 +0.4
1,904,957 + MPMX19_01822 0.67 +0.1
1,904,957 + MPMX19_01822 0.67 -1.5
1,904,957 + MPMX19_01822 0.67 +0.1
1,904,958 - MPMX19_01822 0.68 +0.4
1,904,958 - MPMX19_01822 0.68 -0.8
1,904,958 - MPMX19_01822 0.68 -0.4
1,904,958 - MPMX19_01822 0.68 +2.4
1,904,958 - MPMX19_01822 0.68 +0.6
1,905,008 + MPMX19_01822 0.70 +0.6
1,905,008 + MPMX19_01822 0.70 +2.4
1,905,008 + MPMX19_01822 0.70 +1.1
1,905,008 + MPMX19_01822 0.70 -0.2
1,905,008 + MPMX19_01822 0.70 -0.2
1,905,008 + MPMX19_01822 0.70 +0.1
1,905,008 + MPMX19_01822 0.70 -1.2
1,905,008 + MPMX19_01822 0.70 +0.4
1,905,008 + MPMX19_01822 0.70 -0.6
1,905,009 - MPMX19_01822 0.71 +0.4
1,905,009 - MPMX19_01822 0.71 +2.1
1,905,009 - MPMX19_01822 0.71 -0.2
1,905,009 - MPMX19_01822 0.71 -0.6
1,905,009 - MPMX19_01822 0.71 +1.4
1,905,009 - MPMX19_01822 0.71 -0.6
1,905,009 - MPMX19_01822 0.71 -0.6
1,905,009 - MPMX19_01822 0.71 +0.2
1,905,009 - MPMX19_01822 0.71 -1.2
1,905,009 - MPMX19_01822 0.71 +0.4
1,905,026 + MPMX19_01822 0.72 +1.4
1,905,146 + MPMX19_01822 0.79 -0.6
1,905,146 + MPMX19_01822 0.79 +0.1
1,905,146 + MPMX19_01822 0.79 +0.1
1,905,146 + MPMX19_01822 0.79 -0.8
1,905,146 + MPMX19_01822 0.79 -1.1
1,905,147 - MPMX19_01822 0.79 +0.8
1,905,147 - MPMX19_01822 0.79 -0.6
1,905,395 + -0.4
1,905,395 + -1.5
1,905,395 + -0.2
1,905,395 + -0.2
1,905,395 + -2.2
1,905,395 + -0.4
1,905,396 - +0.2
1,905,396 - -0.1
1,905,396 - -0.8
1,905,396 - -0.8
1,905,396 - -1.8
1,905,396 - -2.1
1,905,396 - +0.4
1,905,396 - -0.8
1,905,396 - -0.1
1,905,396 - -0.4
1,905,566 + +0.8
1,905,566 + +0.2
1,905,566 + +0.1
1,905,566 + +0.1
1,905,566 + -0.7
1,905,566 + -0.2
1,905,566 + +0.3
1,905,566 + +0.4
1,905,566 + +0.2
1,905,566 + -1.3
1,905,566 + -2.1
1,905,566 + -1.5
1,905,567 - -0.3
1,905,567 - -1.7
1,905,567 - -2.3
1,905,567 - -0.3
1,905,567 - +0.8
1,905,567 - -0.8
1,905,567 - -1.6
1,905,567 - -1.5
1,905,567 - -1.0
1,905,593 + -1.1
1,905,593 + +0.6
1,905,593 + +1.4
1,905,593 + -0.4
1,905,593 + -2.3
1,905,593 + -0.5
1,905,593 + -0.4
1,905,593 + -1.1
1,905,593 + +0.3
1,905,595 + -1.7
1,905,595 + -0.3
1,905,595 + -0.6
1,905,595 + +0.4
1,905,595 + +0.1
1,905,595 + -0.4
1,905,595 + -1.2
1,905,595 + +0.5
1,905,595 + -0.6
1,905,595 + -0.2
1,905,595 + +0.4
1,905,595 + -0.9
1,905,595 + -0.9
1,905,595 + -1.1
1,905,595 + -0.4
1,905,595 + -1.6
1,905,595 + -2.6
1,905,595 + -2.1
1,905,595 + -0.2
1,905,595 + -1.5
1,905,595 + -1.8
1,905,596 - -1.0
1,905,613 + -0.5
1,905,613 + +0.4
1,905,613 + -1.0
1,905,634 + -0.1
1,905,634 + -0.8

Or see this region's nucleotide sequence