Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01788 and MPMX19_01789 are separated by 454 nucleotides MPMX19_01789 and MPMX19_01790 are separated by 13 nucleotides MPMX19_01790 and MPMX19_01791 are separated by 124 nucleotides
MPMX19_01788: MPMX19_01788 - tRNA-Gly, at 1,875,566 to 1,875,651
_01788
MPMX19_01789: MPMX19_01789 - Urease subunit beta, at 1,876,106 to 1,876,411
_01789
MPMX19_01790: MPMX19_01790 - Urease subunit gamma 1, at 1,876,425 to 1,876,727
_01790
MPMX19_01791: MPMX19_01791 - Urease accessory protein UreD, at 1,876,852 to 1,877,742
_01791
Position (kb)
1876
1877 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1875.404 kb on + strand at 1875.405 kb on - strand at 1875.961 kb on + strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1875.962 kb on - strand at 1876.039 kb on + strand at 1876.039 kb on + strand at 1876.039 kb on + strand at 1876.039 kb on + strand at 1876.040 kb on - strand at 1876.040 kb on - strand at 1876.040 kb on - strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.051 kb on + strand at 1876.052 kb on - strand at 1876.052 kb on - strand at 1876.052 kb on - strand at 1876.161 kb on + strand, within MPMX19_01789 at 1876.161 kb on + strand, within MPMX19_01789 at 1876.284 kb on + strand, within MPMX19_01789 at 1876.284 kb on + strand, within MPMX19_01789 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.603 kb on + strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.604 kb on - strand, within MPMX19_01790 at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.769 kb on + strand at 1876.770 kb on - strand at 1876.770 kb on - strand at 1876.770 kb on - strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.803 kb on + strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.804 kb on - strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.810 kb on + strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.811 kb on - strand at 1876.928 kb on + strand at 1876.928 kb on + strand at 1876.929 kb on - strand at 1876.929 kb on - strand at 1876.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 1,875,404 + -0.9 1,875,405 - -0.0 1,875,961 + -1.1 1,875,962 - +0.6 1,875,962 - -2.1 1,875,962 - -2.0 1,875,962 - -1.5 1,875,962 - -0.7 1,875,962 - -1.1 1,876,039 + +0.6 1,876,039 + +0.8 1,876,039 + -0.6 1,876,039 + +0.2 1,876,040 - +0.1 1,876,040 - +1.1 1,876,040 - +0.5 1,876,051 + +1.2 1,876,051 + +1.4 1,876,051 + -0.9 1,876,051 + -0.6 1,876,051 + -0.8 1,876,052 - -1.5 1,876,052 - -1.9 1,876,052 - +0.1 1,876,161 + MPMX19_01789 0.18 +1.4 1,876,161 + MPMX19_01789 0.18 -1.4 1,876,284 + MPMX19_01789 0.58 -0.7 1,876,284 + MPMX19_01789 0.58 -0.5 1,876,603 + MPMX19_01790 0.59 +0.3 1,876,603 + MPMX19_01790 0.59 -0.0 1,876,603 + MPMX19_01790 0.59 +1.7 1,876,603 + MPMX19_01790 0.59 -0.8 1,876,603 + MPMX19_01790 0.59 -0.5 1,876,604 - MPMX19_01790 0.59 +0.2 1,876,604 - MPMX19_01790 0.59 -2.0 1,876,604 - MPMX19_01790 0.59 -0.6 1,876,604 - MPMX19_01790 0.59 +1.4 1,876,604 - MPMX19_01790 0.59 -0.3 1,876,604 - MPMX19_01790 0.59 -2.4 1,876,604 - MPMX19_01790 0.59 -1.5 1,876,769 + -0.4 1,876,769 + -1.8 1,876,769 + -0.2 1,876,769 + -0.6 1,876,769 + +1.1 1,876,769 + -0.4 1,876,769 + -0.6 1,876,770 - -1.8 1,876,770 - -0.2 1,876,770 - -0.9 1,876,803 + -1.6 1,876,803 + +1.0 1,876,803 + -0.1 1,876,803 + -1.5 1,876,803 + +0.3 1,876,803 + -0.6 1,876,804 - +0.6 1,876,804 - -0.5 1,876,804 - +0.1 1,876,804 - -0.1 1,876,804 - -0.4 1,876,804 - -1.1 1,876,804 - -2.9 1,876,804 - -0.9 1,876,810 + -0.3 1,876,810 + -1.5 1,876,810 + -0.6 1,876,810 + +1.1 1,876,810 + -1.3 1,876,810 + -1.8 1,876,810 + -1.1 1,876,810 + -2.2 1,876,810 + +0.6 1,876,810 + -1.4 1,876,811 - +0.1 1,876,811 - -1.1 1,876,811 - +0.4 1,876,811 - +0.1 1,876,811 - -0.5 1,876,811 - -0.4 1,876,811 - +0.1 1,876,811 - -0.5 1,876,811 - -0.9 1,876,811 - -0.3 1,876,811 - -0.1 1,876,811 - -1.2 1,876,811 - -1.8 1,876,811 - -0.9 1,876,811 - +0.8 1,876,928 + -2.7 1,876,928 + -1.6 1,876,929 - -1.5 1,876,929 - -0.8 1,876,929 - -0.8
Or see this region's nucleotide sequence