Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01774

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01772 and MPMX19_01773 are separated by 125 nucleotidesMPMX19_01773 and MPMX19_01774 are separated by 55 nucleotidesMPMX19_01774 and MPMX19_01775 are separated by 184 nucleotidesMPMX19_01775 and MPMX19_01776 are separated by 36 nucleotides MPMX19_01772: MPMX19_01772 - putative inner membrane transporter YedA, at 1,859,298 to 1,860,218 _01772 MPMX19_01773: MPMX19_01773 - hypothetical protein, at 1,860,344 to 1,861,075 _01773 MPMX19_01774: MPMX19_01774 - Ketol-acid reductoisomerase (NADP(+)), at 1,861,131 to 1,862,150 _01774 MPMX19_01775: MPMX19_01775 - Acetolactate synthase isozyme 3 small subunit, at 1,862,335 to 1,862,841 _01775 MPMX19_01776: MPMX19_01776 - Acetolactate synthase isozyme 3 large subunit, at 1,862,878 to 1,864,641 _01776 Position (kb) 1861 1862 1863Strain fitness (log2 ratio) -2 -1 0 1 2at 1860.337 kb on + strandat 1860.337 kb on + strandat 1860.349 kb on + strandat 1860.349 kb on + strandat 1860.349 kb on + strandat 1860.349 kb on + strandat 1860.349 kb on + strandat 1860.350 kb on - strandat 1860.350 kb on - strandat 1860.350 kb on - strandat 1860.350 kb on - strandat 1860.350 kb on - strandat 1860.350 kb on - strandat 1860.581 kb on + strand, within MPMX19_01773at 1860.581 kb on + strand, within MPMX19_01773at 1860.581 kb on + strand, within MPMX19_01773at 1860.581 kb on + strand, within MPMX19_01773at 1860.582 kb on - strand, within MPMX19_01773at 1860.582 kb on - strand, within MPMX19_01773at 1860.582 kb on - strand, within MPMX19_01773at 1860.582 kb on - strand, within MPMX19_01773at 1860.584 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.710 kb on + strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1860.711 kb on - strand, within MPMX19_01773at 1862.336 kb on + strandat 1862.337 kb on - strandat 1862.337 kb on - strandat 1862.337 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,860,337 + +0.2
1,860,337 + +1.1
1,860,349 + -1.7
1,860,349 + +0.7
1,860,349 + -1.8
1,860,349 + -1.1
1,860,349 + -0.0
1,860,350 - -0.6
1,860,350 - -0.6
1,860,350 - +0.2
1,860,350 - -0.2
1,860,350 - -1.9
1,860,350 - -0.4
1,860,581 + MPMX19_01773 0.32 -0.5
1,860,581 + MPMX19_01773 0.32 -0.8
1,860,581 + MPMX19_01773 0.32 -0.8
1,860,581 + MPMX19_01773 0.32 -0.3
1,860,582 - MPMX19_01773 0.33 -1.7
1,860,582 - MPMX19_01773 0.33 -1.4
1,860,582 - MPMX19_01773 0.33 +0.4
1,860,582 - MPMX19_01773 0.33 -0.3
1,860,584 + MPMX19_01773 0.33 -0.2
1,860,710 + MPMX19_01773 0.50 -0.2
1,860,710 + MPMX19_01773 0.50 +2.1
1,860,710 + MPMX19_01773 0.50 -1.3
1,860,710 + MPMX19_01773 0.50 -0.2
1,860,710 + MPMX19_01773 0.50 -1.2
1,860,710 + MPMX19_01773 0.50 -0.4
1,860,710 + MPMX19_01773 0.50 +0.2
1,860,711 - MPMX19_01773 0.50 -1.0
1,860,711 - MPMX19_01773 0.50 -0.6
1,860,711 - MPMX19_01773 0.50 +0.1
1,860,711 - MPMX19_01773 0.50 -0.1
1,860,711 - MPMX19_01773 0.50 -1.9
1,860,711 - MPMX19_01773 0.50 -1.1
1,860,711 - MPMX19_01773 0.50 -0.7
1,860,711 - MPMX19_01773 0.50 +0.2
1,860,711 - MPMX19_01773 0.50 +2.1
1,862,336 + -0.9
1,862,337 - -2.0
1,862,337 - -0.4
1,862,337 - -0.6

Or see this region's nucleotide sequence