Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01680

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01678 and MPMX19_01679 overlap by 4 nucleotidesMPMX19_01679 and MPMX19_01680 are separated by 7 nucleotidesMPMX19_01680 and MPMX19_01681 overlap by 4 nucleotidesMPMX19_01681 and MPMX19_01682 overlap by 4 nucleotides MPMX19_01678: MPMX19_01678 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, at 1,767,049 to 1,768,290 _01678 MPMX19_01679: MPMX19_01679 - hypothetical protein, at 1,768,287 to 1,768,538 _01679 MPMX19_01680: MPMX19_01680 - UDP-N-acetylmuramate--L-alanine ligase, at 1,768,546 to 1,769,964 _01680 MPMX19_01681: MPMX19_01681 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 1,769,961 to 1,770,908 _01681 MPMX19_01682: MPMX19_01682 - D-alanine--D-alanine ligase B, at 1,770,905 to 1,771,852 _01682 Position (kb) 1768 1769 1770Strain fitness (log2 ratio) -3 -2 -1 0 1at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1768.377 kb on + strand, within MPMX19_01679at 1769.947 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,768,377 + MPMX19_01679 0.36 -2.3
1,768,377 + MPMX19_01679 0.36 +0.6
1,768,377 + MPMX19_01679 0.36 -0.3
1,768,377 + MPMX19_01679 0.36 -2.9
1,768,377 + MPMX19_01679 0.36 +1.4
1,768,377 + MPMX19_01679 0.36 +0.2
1,768,377 + MPMX19_01679 0.36 -1.6
1,768,377 + MPMX19_01679 0.36 -3.3
1,768,377 + MPMX19_01679 0.36 -1.8
1,768,377 + MPMX19_01679 0.36 -0.8
1,768,377 + MPMX19_01679 0.36 -0.7
1,768,377 + MPMX19_01679 0.36 -1.1
1,768,377 + MPMX19_01679 0.36 -1.3
1,768,377 + MPMX19_01679 0.36 -0.3
1,769,947 + -0.7

Or see this region's nucleotide sequence