Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01513

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01511 and MPMX19_01512 are separated by 23 nucleotidesMPMX19_01512 and MPMX19_01513 overlap by 8 nucleotidesMPMX19_01513 and MPMX19_01514 are separated by 51 nucleotidesMPMX19_01514 and MPMX19_01515 overlap by 4 nucleotides MPMX19_01511: MPMX19_01511 - HTH-type transcriptional activator RhaR, at 1,583,687 to 1,584,583 _01511 MPMX19_01512: MPMX19_01512 - Inner membrane protein YgaZ, at 1,584,607 to 1,585,329 _01512 MPMX19_01513: MPMX19_01513 - hypothetical protein, at 1,585,322 to 1,585,630 _01513 MPMX19_01514: MPMX19_01514 - Ribosomal RNA small subunit methyltransferase A, at 1,585,682 to 1,586,596 _01514 MPMX19_01515: MPMX19_01515 - Peptidyl-tRNA hydrolase ArfB, at 1,586,593 to 1,587,012 _01515 Position (kb) 1585 1586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1584.386 kb on + strand, within MPMX19_01511at 1584.386 kb on + strand, within MPMX19_01511at 1584.386 kb on + strand, within MPMX19_01511at 1584.387 kb on - strand, within MPMX19_01511at 1584.387 kb on - strand, within MPMX19_01511at 1584.581 kb on + strandat 1584.582 kb on - strandat 1584.582 kb on - strandat 1584.582 kb on - strandat 1584.582 kb on - strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.672 kb on + strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.673 kb on - strandat 1584.822 kb on + strand, within MPMX19_01512at 1585.012 kb on + strand, within MPMX19_01512at 1585.012 kb on + strand, within MPMX19_01512at 1585.013 kb on - strand, within MPMX19_01512at 1585.013 kb on - strand, within MPMX19_01512at 1585.013 kb on - strand, within MPMX19_01512at 1585.013 kb on - strand, within MPMX19_01512at 1585.018 kb on + strand, within MPMX19_01512at 1585.018 kb on + strand, within MPMX19_01512at 1585.018 kb on + strand, within MPMX19_01512at 1585.019 kb on - strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.039 kb on + strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.040 kb on - strand, within MPMX19_01512at 1585.128 kb on + strand, within MPMX19_01512at 1585.128 kb on + strand, within MPMX19_01512at 1585.128 kb on + strand, within MPMX19_01512at 1585.128 kb on + strand, within MPMX19_01512at 1585.128 kb on + strand, within MPMX19_01512at 1585.129 kb on - strand, within MPMX19_01512at 1585.129 kb on - strand, within MPMX19_01512at 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.689 kb on - strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,584,386 + MPMX19_01511 0.78 -1.0
1,584,386 + MPMX19_01511 0.78 -0.5
1,584,386 + MPMX19_01511 0.78 -1.3
1,584,387 - MPMX19_01511 0.78 -0.6
1,584,387 - MPMX19_01511 0.78 -1.2
1,584,581 + -1.5
1,584,582 - +0.0
1,584,582 - -1.0
1,584,582 - -0.1
1,584,582 - -0.2
1,584,672 + -0.8
1,584,672 + -0.2
1,584,672 + -0.6
1,584,672 + -1.6
1,584,672 + -0.6
1,584,672 + +0.2
1,584,672 + -0.6
1,584,672 + +1.8
1,584,672 + -1.7
1,584,672 + +1.4
1,584,672 + -0.9
1,584,672 + -1.1
1,584,672 + -0.8
1,584,672 + -1.0
1,584,673 - +0.4
1,584,673 - -0.5
1,584,673 - -0.6
1,584,673 - -1.2
1,584,673 - +0.4
1,584,673 - +0.5
1,584,673 - -1.5
1,584,673 - -1.0
1,584,673 - -1.6
1,584,673 - -1.0
1,584,673 - -0.2
1,584,822 + MPMX19_01512 0.30 -0.6
1,585,012 + MPMX19_01512 0.56 -0.5
1,585,012 + MPMX19_01512 0.56 -2.2
1,585,013 - MPMX19_01512 0.56 +0.5
1,585,013 - MPMX19_01512 0.56 +0.0
1,585,013 - MPMX19_01512 0.56 -0.6
1,585,013 - MPMX19_01512 0.56 -0.2
1,585,018 + MPMX19_01512 0.57 -1.2
1,585,018 + MPMX19_01512 0.57 +1.8
1,585,018 + MPMX19_01512 0.57 -1.0
1,585,019 - MPMX19_01512 0.57 -0.6
1,585,039 + MPMX19_01512 0.60 -2.0
1,585,039 + MPMX19_01512 0.60 -0.6
1,585,039 + MPMX19_01512 0.60 +0.7
1,585,039 + MPMX19_01512 0.60 -2.2
1,585,039 + MPMX19_01512 0.60 -0.5
1,585,039 + MPMX19_01512 0.60 +0.4
1,585,039 + MPMX19_01512 0.60 +0.4
1,585,040 - MPMX19_01512 0.60 -0.6
1,585,040 - MPMX19_01512 0.60 -1.2
1,585,040 - MPMX19_01512 0.60 -0.6
1,585,040 - MPMX19_01512 0.60 +0.4
1,585,040 - MPMX19_01512 0.60 -1.2
1,585,040 - MPMX19_01512 0.60 +0.5
1,585,040 - MPMX19_01512 0.60 -1.2
1,585,040 - MPMX19_01512 0.60 +0.0
1,585,040 - MPMX19_01512 0.60 +0.5
1,585,040 - MPMX19_01512 0.60 +0.6
1,585,040 - MPMX19_01512 0.60 -0.9
1,585,040 - MPMX19_01512 0.60 -1.6
1,585,128 + MPMX19_01512 0.72 -0.2
1,585,128 + MPMX19_01512 0.72 +0.5
1,585,128 + MPMX19_01512 0.72 -0.6
1,585,128 + MPMX19_01512 0.72 -1.0
1,585,128 + MPMX19_01512 0.72 -0.8
1,585,129 - MPMX19_01512 0.72 +0.1
1,585,129 - MPMX19_01512 0.72 -2.8
1,585,688 + -0.6
1,585,688 + -0.3
1,585,688 + +1.4
1,585,688 + +0.2
1,585,688 + -1.3
1,585,688 + -0.2
1,585,688 + -1.0
1,585,688 + +0.5
1,585,689 - -0.5
1,585,690 + -0.2
1,585,690 + -0.8
1,585,690 + -1.7
1,585,690 + -0.6
1,585,690 + -1.9
1,585,690 + +0.0
1,585,690 + -1.3
1,585,690 + +0.4

Or see this region's nucleotide sequence