Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01389

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01388 and MPMX19_01389 are separated by 8 nucleotidesMPMX19_01389 and MPMX19_01390 are separated by 308 nucleotides MPMX19_01388: MPMX19_01388 - Outer membrane protein assembly factor BamB, at 1,452,801 to 1,454,168 _01388 MPMX19_01389: MPMX19_01389 - hypothetical protein, at 1,454,177 to 1,454,821 _01389 MPMX19_01390: MPMX19_01390 - Transcriptional regulatory protein LnrK, at 1,455,130 to 1,455,771 _01390 Position (kb) 1454 1455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1454.191 kb on - strandat 1454.263 kb on - strand, within MPMX19_01389at 1454.482 kb on - strand, within MPMX19_01389at 1455.132 kb on - strandat 1455.132 kb on - strandat 1455.132 kb on - strandat 1455.132 kb on - strandat 1455.132 kb on - strandat 1455.245 kb on + strand, within MPMX19_01390at 1455.246 kb on - strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.401 kb on + strand, within MPMX19_01390at 1455.402 kb on - strand, within MPMX19_01390at 1455.402 kb on - strand, within MPMX19_01390at 1455.402 kb on - strand, within MPMX19_01390at 1455.402 kb on - strand, within MPMX19_01390at 1455.402 kb on - strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.470 kb on + strand, within MPMX19_01390at 1455.471 kb on - strand, within MPMX19_01390at 1455.471 kb on - strand, within MPMX19_01390at 1455.471 kb on - strand, within MPMX19_01390at 1455.471 kb on - strand, within MPMX19_01390at 1455.471 kb on - strand, within MPMX19_01390at 1455.471 kb on - strand, within MPMX19_01390at 1455.603 kb on + strand, within MPMX19_01390at 1455.603 kb on + strand, within MPMX19_01390at 1455.603 kb on + strand, within MPMX19_01390at 1455.603 kb on + strand, within MPMX19_01390at 1455.603 kb on + strand, within MPMX19_01390at 1455.603 kb on + strand, within MPMX19_01390at 1455.604 kb on - strand, within MPMX19_01390at 1455.604 kb on - strand, within MPMX19_01390at 1455.604 kb on - strand, within MPMX19_01390at 1455.604 kb on - strand, within MPMX19_01390at 1455.604 kb on - strand, within MPMX19_01390at 1455.604 kb on - strand, within MPMX19_01390

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,454,191 - -0.2
1,454,263 - MPMX19_01389 0.13 -1.0
1,454,482 - MPMX19_01389 0.47 -1.2
1,455,132 - -0.7
1,455,132 - -2.3
1,455,132 - -0.2
1,455,132 - -0.5
1,455,132 - -1.9
1,455,245 + MPMX19_01390 0.18 -0.3
1,455,246 - MPMX19_01390 0.18 -1.3
1,455,401 + MPMX19_01390 0.42 +0.5
1,455,401 + MPMX19_01390 0.42 -0.3
1,455,401 + MPMX19_01390 0.42 -0.0
1,455,401 + MPMX19_01390 0.42 +1.2
1,455,401 + MPMX19_01390 0.42 +0.7
1,455,401 + MPMX19_01390 0.42 -0.5
1,455,401 + MPMX19_01390 0.42 +0.2
1,455,401 + MPMX19_01390 0.42 -0.6
1,455,401 + MPMX19_01390 0.42 +0.2
1,455,402 - MPMX19_01390 0.42 -1.2
1,455,402 - MPMX19_01390 0.42 +0.2
1,455,402 - MPMX19_01390 0.42 +0.1
1,455,402 - MPMX19_01390 0.42 -0.2
1,455,402 - MPMX19_01390 0.42 -0.9
1,455,470 + MPMX19_01390 0.53 +1.1
1,455,470 + MPMX19_01390 0.53 -1.4
1,455,470 + MPMX19_01390 0.53 -1.2
1,455,470 + MPMX19_01390 0.53 -0.5
1,455,470 + MPMX19_01390 0.53 -2.6
1,455,470 + MPMX19_01390 0.53 +0.1
1,455,470 + MPMX19_01390 0.53 +0.5
1,455,470 + MPMX19_01390 0.53 -0.7
1,455,471 - MPMX19_01390 0.53 -0.9
1,455,471 - MPMX19_01390 0.53 -0.4
1,455,471 - MPMX19_01390 0.53 -1.2
1,455,471 - MPMX19_01390 0.53 -0.7
1,455,471 - MPMX19_01390 0.53 -1.8
1,455,471 - MPMX19_01390 0.53 -0.5
1,455,603 + MPMX19_01390 0.74 +0.3
1,455,603 + MPMX19_01390 0.74 -0.4
1,455,603 + MPMX19_01390 0.74 +0.5
1,455,603 + MPMX19_01390 0.74 -1.0
1,455,603 + MPMX19_01390 0.74 -1.9
1,455,603 + MPMX19_01390 0.74 +0.5
1,455,604 - MPMX19_01390 0.74 -0.4
1,455,604 - MPMX19_01390 0.74 -0.5
1,455,604 - MPMX19_01390 0.74 -2.9
1,455,604 - MPMX19_01390 0.74 -0.7
1,455,604 - MPMX19_01390 0.74 -0.2
1,455,604 - MPMX19_01390 0.74 +2.0

Or see this region's nucleotide sequence