Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01131

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01130 and MPMX19_01131 are separated by 213 nucleotidesMPMX19_01131 and MPMX19_01132 are separated by 320 nucleotidesMPMX19_01132 and MPMX19_01133 are separated by 77 nucleotides MPMX19_01130: MPMX19_01130 - hypothetical protein, at 1,164,050 to 1,164,844 _01130 MPMX19_01131: MPMX19_01131 - hypothetical protein, at 1,165,058 to 1,165,486 _01131 MPMX19_01132: MPMX19_01132 - Single-stranded DNA-binding protein, at 1,165,807 to 1,166,307 _01132 MPMX19_01133: MPMX19_01133 - HTH-type transcriptional regulator PgrR, at 1,166,385 to 1,167,287 _01133 Position (kb) 1165 1166Strain fitness (log2 ratio) -2 -1 0 1at 1164.973 kb on + strandat 1164.974 kb on - strandat 1164.994 kb on - strandat 1165.005 kb on + strandat 1165.023 kb on - strandat 1165.023 kb on - strandat 1165.023 kb on - strandat 1165.023 kb on - strandat 1165.108 kb on + strand, within MPMX19_01131at 1165.109 kb on - strand, within MPMX19_01131at 1165.109 kb on - strand, within MPMX19_01131at 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.517 kb on + strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.518 kb on - strandat 1165.557 kb on + strandat 1165.557 kb on + strandat 1165.557 kb on + strandat 1165.557 kb on + strandat 1165.558 kb on - strandat 1165.558 kb on - strandat 1165.558 kb on - strandat 1165.558 kb on - strandat 1165.558 kb on - strandat 1165.559 kb on + strandat 1165.559 kb on + strandat 1165.559 kb on + strandat 1165.560 kb on - strandat 1165.560 kb on - strandat 1165.792 kb on + strandat 1165.792 kb on + strandat 1165.792 kb on + strandat 1165.792 kb on + strandat 1166.381 kb on + strandat 1166.381 kb on + strandat 1166.381 kb on + strandat 1166.382 kb on - strandat 1166.420 kb on + strandat 1166.420 kb on + strandat 1166.420 kb on + strandat 1166.421 kb on - strandat 1166.421 kb on - strandat 1166.468 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.470 kb on + strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strandat 1166.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,164,973 + -2.7
1,164,974 - +0.3
1,164,994 - -1.0
1,165,005 + -0.0
1,165,023 - +0.6
1,165,023 - -0.0
1,165,023 - -1.6
1,165,023 - -0.7
1,165,108 + MPMX19_01131 0.12 +1.6
1,165,109 - MPMX19_01131 0.12 -1.0
1,165,109 - MPMX19_01131 0.12 -1.2
1,165,517 + -0.7
1,165,517 + -2.3
1,165,517 + -0.6
1,165,517 + -1.2
1,165,517 + -0.0
1,165,517 + -2.0
1,165,517 + -1.1
1,165,517 + -0.5
1,165,517 + -1.9
1,165,517 + -0.9
1,165,518 - +1.5
1,165,518 - -1.0
1,165,518 - -1.4
1,165,518 - +0.5
1,165,518 - -1.6
1,165,518 - +0.1
1,165,518 - +0.7
1,165,518 - -1.1
1,165,518 - -0.8
1,165,518 - +0.3
1,165,557 + -1.6
1,165,557 + -1.1
1,165,557 + -0.5
1,165,557 + -0.5
1,165,558 - +0.3
1,165,558 - -1.8
1,165,558 - +0.3
1,165,558 - -1.7
1,165,558 - -0.0
1,165,559 + +0.3
1,165,559 + -1.6
1,165,559 + +0.4
1,165,560 - -1.1
1,165,560 - -0.9
1,165,792 + -1.4
1,165,792 + -1.9
1,165,792 + -1.4
1,165,792 + -2.6
1,166,381 + -0.3
1,166,381 + -1.4
1,166,381 + +0.4
1,166,382 - -1.1
1,166,420 + +0.3
1,166,420 + -0.7
1,166,420 + -1.8
1,166,421 - -0.6
1,166,421 - -0.6
1,166,468 + -1.4
1,166,470 + -1.4
1,166,470 + -0.7
1,166,470 + -1.1
1,166,470 + -0.7
1,166,470 + -0.1
1,166,470 + -0.0
1,166,470 + -1.0
1,166,470 + -0.1
1,166,471 - -0.0
1,166,471 - -0.8
1,166,471 - +0.1
1,166,471 - +1.0
1,166,471 - +0.2
1,166,471 - +0.3
1,166,471 - -1.9
1,166,471 - -0.6
1,166,471 - -0.4
1,166,471 - +0.5
1,166,471 - -0.1

Or see this region's nucleotide sequence