Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01082

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01080 and MPMX19_01081 are separated by 49 nucleotidesMPMX19_01081 and MPMX19_01082 are separated by 4 nucleotidesMPMX19_01082 and MPMX19_01083 are separated by 13 nucleotidesMPMX19_01083 and MPMX19_01084 overlap by 4 nucleotides MPMX19_01080: MPMX19_01080 - Peroxiredoxin, at 1,117,576 to 1,118,058 _01080 MPMX19_01081: MPMX19_01081 - Ribonuclease HI, at 1,118,108 to 1,118,584 _01081 MPMX19_01082: MPMX19_01082 - Homoserine kinase, at 1,118,589 to 1,119,572 _01082 MPMX19_01083: MPMX19_01083 - hypothetical protein, at 1,119,586 to 1,120,419 _01083 MPMX19_01084: MPMX19_01084 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 1,120,416 to 1,121,192 _01084 Position (kb) 1118 1119 1120Strain fitness (log2 ratio) -1 0 1 2 3at 1117.596 kb on + strandat 1117.805 kb on + strand, within MPMX19_01080at 1117.805 kb on + strand, within MPMX19_01080at 1118.337 kb on + strand, within MPMX19_01081at 1118.337 kb on + strand, within MPMX19_01081at 1118.448 kb on + strand, within MPMX19_01081at 1118.623 kb on + strandat 1118.623 kb on + strandat 1118.624 kb on - strandat 1118.624 kb on - strandat 1118.624 kb on - strandat 1119.632 kb on + strandat 1119.632 kb on + strandat 1119.632 kb on + strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.633 kb on - strandat 1119.635 kb on + strandat 1119.635 kb on + strandat 1119.635 kb on + strandat 1119.635 kb on + strandat 1119.636 kb on - strandat 1119.636 kb on - strandat 1119.998 kb on + strand, within MPMX19_01083at 1119.998 kb on + strand, within MPMX19_01083at 1119.998 kb on + strand, within MPMX19_01083at 1119.998 kb on + strand, within MPMX19_01083at 1119.999 kb on - strand, within MPMX19_01083at 1119.999 kb on - strand, within MPMX19_01083at 1120.328 kb on + strand, within MPMX19_01083at 1120.328 kb on + strand, within MPMX19_01083at 1120.328 kb on + strand, within MPMX19_01083at 1120.328 kb on + strand, within MPMX19_01083at 1120.329 kb on - strand, within MPMX19_01083at 1120.329 kb on - strand, within MPMX19_01083at 1120.329 kb on - strand, within MPMX19_01083at 1120.329 kb on - strand, within MPMX19_01083at 1120.430 kb on - strandat 1120.469 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,117,596 + +0.1
1,117,805 + MPMX19_01080 0.47 -1.1
1,117,805 + MPMX19_01080 0.47 -0.4
1,118,337 + MPMX19_01081 0.48 -0.7
1,118,337 + MPMX19_01081 0.48 +0.5
1,118,448 + MPMX19_01081 0.71 +0.3
1,118,623 + +1.5
1,118,623 + -0.7
1,118,624 - -1.5
1,118,624 - +0.9
1,118,624 - -0.7
1,119,632 + -0.7
1,119,632 + -0.0
1,119,632 + -0.0
1,119,633 - -0.7
1,119,633 - -1.0
1,119,633 - -0.3
1,119,633 - -0.7
1,119,633 - -0.9
1,119,633 - -0.6
1,119,633 - +1.3
1,119,633 - -1.1
1,119,635 + -0.3
1,119,635 + -0.0
1,119,635 + +0.5
1,119,635 + -0.7
1,119,636 - -0.5
1,119,636 - -0.5
1,119,998 + MPMX19_01083 0.49 +0.9
1,119,998 + MPMX19_01083 0.49 -0.5
1,119,998 + MPMX19_01083 0.49 -1.1
1,119,998 + MPMX19_01083 0.49 +3.3
1,119,999 - MPMX19_01083 0.50 -0.9
1,119,999 - MPMX19_01083 0.50 -0.3
1,120,328 + MPMX19_01083 0.89 -0.9
1,120,328 + MPMX19_01083 0.89 -0.4
1,120,328 + MPMX19_01083 0.89 -0.0
1,120,328 + MPMX19_01083 0.89 +0.5
1,120,329 - MPMX19_01083 0.89 -0.3
1,120,329 - MPMX19_01083 0.89 -1.1
1,120,329 - MPMX19_01083 0.89 -1.2
1,120,329 - MPMX19_01083 0.89 +0.7
1,120,430 - -0.4
1,120,469 - -0.1

Or see this region's nucleotide sequence