Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01081

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01079 and MPMX19_01080 are separated by 172 nucleotidesMPMX19_01080 and MPMX19_01081 are separated by 49 nucleotidesMPMX19_01081 and MPMX19_01082 are separated by 4 nucleotides MPMX19_01079: MPMX19_01079 - hypothetical protein, at 1,117,050 to 1,117,403 _01079 MPMX19_01080: MPMX19_01080 - Peroxiredoxin, at 1,117,576 to 1,118,058 _01080 MPMX19_01081: MPMX19_01081 - Ribonuclease HI, at 1,118,108 to 1,118,584 _01081 MPMX19_01082: MPMX19_01082 - Homoserine kinase, at 1,118,589 to 1,119,572 _01082 Position (kb) 1118 1119Strain fitness (log2 ratio) -2 -1 0 1at 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.420 kb on + strandat 1117.421 kb on - strandat 1117.421 kb on - strandat 1117.421 kb on - strandat 1117.421 kb on - strandat 1117.421 kb on - strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.470 kb on + strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.471 kb on - strandat 1117.568 kb on + strandat 1117.568 kb on + strandat 1117.568 kb on + strandat 1117.568 kb on + strandat 1117.568 kb on + strandat 1117.568 kb on + strandat 1117.569 kb on - strandat 1117.569 kb on - strandat 1117.596 kb on + strandat 1117.805 kb on + strand, within MPMX19_01080at 1117.805 kb on + strand, within MPMX19_01080at 1118.337 kb on + strand, within MPMX19_01081at 1118.337 kb on + strand, within MPMX19_01081at 1118.448 kb on + strand, within MPMX19_01081at 1118.623 kb on + strandat 1118.623 kb on + strandat 1118.624 kb on - strandat 1118.624 kb on - strandat 1118.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,117,420 + -1.3
1,117,420 + -1.1
1,117,420 + -1.1
1,117,420 + +0.1
1,117,420 + -1.1
1,117,420 + -0.4
1,117,420 + -0.6
1,117,420 + -0.7
1,117,421 - -1.1
1,117,421 - -0.6
1,117,421 - +1.0
1,117,421 - -1.0
1,117,421 - -1.6
1,117,470 + -1.3
1,117,470 + -0.7
1,117,470 + -1.1
1,117,470 + -0.1
1,117,470 + -0.1
1,117,470 + -0.9
1,117,470 + -1.3
1,117,470 + -0.5
1,117,471 - +0.9
1,117,471 - -1.0
1,117,471 - -0.0
1,117,471 - -0.5
1,117,471 - +1.3
1,117,471 - -0.4
1,117,471 - -1.4
1,117,471 - +0.7
1,117,471 - -0.9
1,117,568 + -1.9
1,117,568 + +0.4
1,117,568 + -1.0
1,117,568 + -1.5
1,117,568 + -1.0
1,117,568 + -0.6
1,117,569 - -0.5
1,117,569 - -0.3
1,117,596 + +0.1
1,117,805 + MPMX19_01080 0.47 -1.1
1,117,805 + MPMX19_01080 0.47 -0.4
1,118,337 + MPMX19_01081 0.48 -0.7
1,118,337 + MPMX19_01081 0.48 +0.5
1,118,448 + MPMX19_01081 0.71 +0.3
1,118,623 + +1.5
1,118,623 + -0.7
1,118,624 - -1.5
1,118,624 - +0.9
1,118,624 - -0.7

Or see this region's nucleotide sequence