Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00995

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00993 and MPMX19_00994 overlap by 59 nucleotidesMPMX19_00994 and MPMX19_00995 overlap by 10 nucleotidesMPMX19_00995 and MPMX19_00996 are separated by 36 nucleotides MPMX19_00993: MPMX19_00993 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 1,033,792 to 1,034,532 _00993 MPMX19_00994: MPMX19_00994 - hypothetical protein, at 1,034,474 to 1,035,367 _00994 MPMX19_00995: MPMX19_00995 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,035,358 to 1,036,554 _00995 MPMX19_00996: MPMX19_00996 - Metalloprotease MmpA, at 1,036,591 to 1,037,724 _00996 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -2 -1 0 1at 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.678 kb on + strandat 1036.679 kb on - strandat 1036.679 kb on - strandat 1036.679 kb on - strandat 1036.679 kb on - strandat 1036.753 kb on - strand, within MPMX19_00996at 1036.753 kb on - strand, within MPMX19_00996at 1036.753 kb on - strand, within MPMX19_00996at 1036.782 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.804 kb on + strand, within MPMX19_00996at 1036.805 kb on - strand, within MPMX19_00996

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,036,678 + -0.4
1,036,678 + -1.5
1,036,678 + -0.9
1,036,678 + -1.0
1,036,678 + -1.8
1,036,678 + -0.5
1,036,678 + -2.2
1,036,678 + -1.7
1,036,678 + +0.5
1,036,679 - +0.5
1,036,679 - -0.6
1,036,679 - -2.0
1,036,679 - -2.2
1,036,753 - MPMX19_00996 0.14 +1.1
1,036,753 - MPMX19_00996 0.14 +1.3
1,036,753 - MPMX19_00996 0.14 +0.8
1,036,782 + MPMX19_00996 0.17 -1.9
1,036,804 + MPMX19_00996 0.19 -0.9
1,036,804 + MPMX19_00996 0.19 -0.7
1,036,804 + MPMX19_00996 0.19 -1.0
1,036,804 + MPMX19_00996 0.19 -0.7
1,036,805 - MPMX19_00996 0.19 +0.1

Or see this region's nucleotide sequence