Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00517 and MPMX19_00518 are separated by 4 nucleotides MPMX19_00518 and MPMX19_00519 are separated by 151 nucleotides MPMX19_00519 and MPMX19_00520 are separated by 337 nucleotides
MPMX19_00517: MPMX19_00517 - HTH-type transcriptional activator AmpR, at 524,332 to 525,222
_00517
MPMX19_00518: MPMX19_00518 - hypothetical protein, at 525,227 to 525,478
_00518
MPMX19_00519: MPMX19_00519 - Glucose-6-phosphate isomerase, at 525,630 to 527,294
_00519
MPMX19_00520: MPMX19_00520 - hypothetical protein, at 527,632 to 528,324
_00520
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.759 kb on - strand, within MPMX19_00517 at 524.759 kb on - strand, within MPMX19_00517 at 524.905 kb on + strand, within MPMX19_00517 at 524.906 kb on - strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.464 kb on + strand at 525.464 kb on + strand at 525.464 kb on + strand at 525.465 kb on - strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.594 kb on - strand at 525.594 kb on - strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.599 kb on + strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.605 kb on + strand at 525.605 kb on + strand at 525.605 kb on + strand at 525.606 kb on - strand at 525.631 kb on + strand at 525.631 kb on + strand at 525.631 kb on + strand at 525.632 kb on - strand at 525.632 kb on - strand at 527.264 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.425 kb on - strand at 527.517 kb on + strand at 527.517 kb on + strand at 527.518 kb on - strand at 527.611 kb on + strand at 527.615 kb on - strand at 527.618 kb on + strand at 527.619 kb on - strand at 527.619 kb on - strand at 527.619 kb on - strand at 527.632 kb on - strand at 527.830 kb on + strand, within MPMX19_00520 at 527.830 kb on + strand, within MPMX19_00520 at 527.830 kb on + strand, within MPMX19_00520 at 527.830 kb on + strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.941 kb on + strand, within MPMX19_00520 at 527.941 kb on + strand, within MPMX19_00520 at 527.942 kb on - strand, within MPMX19_00520 at 527.942 kb on - strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 524,758 + MPMX19_00517 0.48 -0.2 524,758 + MPMX19_00517 0.48 +0.6 524,758 + MPMX19_00517 0.48 -1.0 524,758 + MPMX19_00517 0.48 -1.0 524,758 + MPMX19_00517 0.48 -1.1 524,758 + MPMX19_00517 0.48 -0.7 524,758 + MPMX19_00517 0.48 +1.2 524,758 + MPMX19_00517 0.48 +0.2 524,758 + MPMX19_00517 0.48 -0.1 524,759 - MPMX19_00517 0.48 +1.2 524,759 - MPMX19_00517 0.48 -0.6 524,905 + MPMX19_00517 0.64 -1.1 524,906 - MPMX19_00517 0.64 -2.0 525,124 + MPMX19_00517 0.89 -0.7 525,124 + MPMX19_00517 0.89 -1.7 525,124 + MPMX19_00517 0.89 -0.6 525,125 - MPMX19_00517 0.89 -2.4 525,125 - MPMX19_00517 0.89 -0.1 525,125 - MPMX19_00517 0.89 -0.1 525,125 - MPMX19_00517 0.89 -0.6 525,444 + MPMX19_00518 0.86 -1.1 525,444 + MPMX19_00518 0.86 +0.8 525,444 + MPMX19_00518 0.86 -0.7 525,444 + MPMX19_00518 0.86 -3.5 525,444 + MPMX19_00518 0.86 +0.8 525,444 + MPMX19_00518 0.86 -1.6 525,444 + MPMX19_00518 0.86 +0.6 525,444 + MPMX19_00518 0.86 +0.5 525,445 - MPMX19_00518 0.87 -0.8 525,445 - MPMX19_00518 0.87 -0.5 525,445 - MPMX19_00518 0.87 -0.8 525,445 - MPMX19_00518 0.87 -1.1 525,445 - MPMX19_00518 0.87 -0.5 525,445 - MPMX19_00518 0.87 -0.8 525,445 - MPMX19_00518 0.87 -0.4 525,445 - MPMX19_00518 0.87 -1.9 525,464 + +1.8 525,464 + -0.4 525,464 + -0.4 525,465 - +0.2 525,593 + +0.2 525,593 + +1.1 525,593 + +0.3 525,593 + -0.4 525,594 - -1.4 525,594 - -0.4 525,595 + -1.6 525,595 + +0.8 525,595 + -0.6 525,595 + +0.2 525,595 + -0.2 525,595 + +0.5 525,595 + -1.8 525,595 + -1.1 525,595 + -0.2 525,595 + -1.2 525,595 + +0.8 525,595 + -0.2 525,595 + +0.0 525,595 + -1.1 525,595 + -1.3 525,595 + +0.6 525,595 + -0.8 525,595 + -1.8 525,595 + +0.0 525,595 + -1.1 525,595 + -1.7 525,595 + -0.6 525,595 + -0.4 525,596 - -0.9 525,596 - +1.4 525,596 - -0.2 525,596 - -1.1 525,596 - +0.9 525,596 - -2.3 525,596 - -0.1 525,596 - +0.0 525,596 - -0.8 525,596 - -1.1 525,596 - -1.1 525,596 - +0.0 525,596 - -1.0 525,596 - -1.0 525,596 - +0.2 525,596 - -0.4 525,596 - +0.0 525,596 - +1.4 525,596 - -0.3 525,596 - -2.0 525,596 - -1.4 525,596 - -0.6 525,596 - +0.9 525,596 - -1.2 525,596 - -1.5 525,596 - -0.6 525,599 + -1.6 525,600 - -0.1 525,600 - -0.6 525,600 - -1.0 525,600 - -1.1 525,600 - -1.3 525,600 - -2.8 525,605 + -0.6 525,605 + -1.5 525,605 + -1.1 525,606 - -1.3 525,631 + -1.1 525,631 + -0.4 525,631 + +0.9 525,632 - -1.9 525,632 - -1.0 527,264 + +0.8 527,362 + +1.4 527,362 + +0.8 527,362 + -0.8 527,362 + +0.8 527,362 + -1.4 527,362 + +0.2 527,363 - +0.0 527,363 - -0.7 527,363 - -0.6 527,363 - +1.5 527,363 - -0.1 527,363 - -2.2 527,363 - +0.1 527,363 - -1.2 527,363 - +0.7 527,363 - -0.6 527,363 - -1.6 527,363 - +0.5 527,363 - +1.8 527,363 - -0.4 527,363 - -0.8 527,363 - -1.5 527,425 - +1.4 527,517 + +0.6 527,517 + +0.1 527,518 - -1.2 527,611 + -1.3 527,615 - -1.0 527,618 + -1.9 527,619 - +1.1 527,619 - +0.8 527,619 - +0.9 527,632 - -1.2 527,830 + MPMX19_00520 0.29 +0.4 527,830 + MPMX19_00520 0.29 +0.1 527,830 + MPMX19_00520 0.29 -0.9 527,830 + MPMX19_00520 0.29 -1.1 527,831 - MPMX19_00520 0.29 +0.2 527,831 - MPMX19_00520 0.29 +0.6 527,831 - MPMX19_00520 0.29 -0.3 527,831 - MPMX19_00520 0.29 -0.5 527,831 - MPMX19_00520 0.29 -0.4 527,831 - MPMX19_00520 0.29 -0.2 527,831 - MPMX19_00520 0.29 -1.9 527,857 + MPMX19_00520 0.32 -0.6 527,857 + MPMX19_00520 0.32 -0.6 527,857 + MPMX19_00520 0.32 -0.2 527,857 + MPMX19_00520 0.32 +0.0 527,857 + MPMX19_00520 0.32 -0.1 527,857 + MPMX19_00520 0.32 -0.4 527,857 + MPMX19_00520 0.32 +1.1 527,857 + MPMX19_00520 0.32 -1.6 527,857 + MPMX19_00520 0.32 -1.2 527,858 - MPMX19_00520 0.33 -1.4 527,858 - MPMX19_00520 0.33 -0.4 527,858 - MPMX19_00520 0.33 +1.2 527,858 - MPMX19_00520 0.33 -1.7 527,858 - MPMX19_00520 0.33 +0.3 527,858 - MPMX19_00520 0.33 -0.5 527,923 + MPMX19_00520 0.42 -1.1 527,923 + MPMX19_00520 0.42 +0.2 527,923 + MPMX19_00520 0.42 -0.2 527,923 + MPMX19_00520 0.42 +1.1 527,923 + MPMX19_00520 0.42 -1.2 527,924 - MPMX19_00520 0.42 -0.2 527,924 - MPMX19_00520 0.42 -1.2 527,924 - MPMX19_00520 0.42 +0.0 527,924 - MPMX19_00520 0.42 -0.8 527,924 - MPMX19_00520 0.42 -0.6 527,924 - MPMX19_00520 0.42 +1.8 527,941 + MPMX19_00520 0.45 +0.4 527,941 + MPMX19_00520 0.45 -2.0 527,942 - MPMX19_00520 0.45 -0.3 527,942 - MPMX19_00520 0.45 -1.7 528,013 + MPMX19_00520 0.55 -0.9 528,013 + MPMX19_00520 0.55 +0.2 528,013 + MPMX19_00520 0.55 -0.4 528,013 + MPMX19_00520 0.55 -2.4 528,013 + MPMX19_00520 0.55 -1.0 528,013 + MPMX19_00520 0.55 -1.0 528,013 + MPMX19_00520 0.55 -2.5 528,014 - MPMX19_00520 0.55 -1.1 528,014 - MPMX19_00520 0.55 -0.9 528,014 - MPMX19_00520 0.55 -0.2 528,014 - MPMX19_00520 0.55 -0.2 528,037 + MPMX19_00520 0.58 -0.2 528,037 + MPMX19_00520 0.58 -1.4 528,037 + MPMX19_00520 0.58 +0.4 528,037 + MPMX19_00520 0.58 +0.4 528,037 + MPMX19_00520 0.58 +0.0 528,037 + MPMX19_00520 0.58 -0.8 528,038 - MPMX19_00520 0.59 +1.1 528,038 - MPMX19_00520 0.59 -0.4 528,038 - MPMX19_00520 0.59 -0.3 528,038 - MPMX19_00520 0.59 +0.0 528,038 - MPMX19_00520 0.59 -1.0 528,038 - MPMX19_00520 0.59 +0.6 528,038 - MPMX19_00520 0.59 -1.0 528,038 - MPMX19_00520 0.59 -0.3 528,038 - MPMX19_00520 0.59 -0.0 528,038 - MPMX19_00520 0.59 -0.8 528,038 - MPMX19_00520 0.59 -1.5 528,214 + MPMX19_00520 0.84 -0.8 528,214 + MPMX19_00520 0.84 -1.5 528,214 + MPMX19_00520 0.84 -1.4 528,214 + MPMX19_00520 0.84 -1.2 528,214 + MPMX19_00520 0.84 -1.4 528,215 - MPMX19_00520 0.84 -2.2 528,215 - MPMX19_00520 0.84 -0.2 528,215 - MPMX19_00520 0.84 -0.6 528,215 - MPMX19_00520 0.84 +0.6 528,215 - MPMX19_00520 0.84 +0.0 528,215 - MPMX19_00520 0.84 -1.2 528,215 - MPMX19_00520 0.84 +0.5 528,215 - MPMX19_00520 0.84 -0.8 528,215 - MPMX19_00520 0.84 +0.2 528,215 - MPMX19_00520 0.84 -2.8
Or see this region's nucleotide sequence