Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00413

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00412 and MPMX19_00413 overlap by 1 nucleotidesMPMX19_00413 and MPMX19_00414 are separated by 93 nucleotides MPMX19_00412: MPMX19_00412 - Protein translocase subunit SecY, at 411,240 to 412,580 _00412 MPMX19_00413: MPMX19_00413 - Adenylate kinase, at 412,580 to 413,227 _00413 MPMX19_00414: MPMX19_00414 - Pyruvate dehydrogenase complex repressor, at 413,321 to 414,094 _00414 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1at 413.246 kb on + strandat 413.246 kb on + strandat 413.592 kb on + strand, within MPMX19_00414at 413.593 kb on - strand, within MPMX19_00414at 413.593 kb on - strand, within MPMX19_00414at 413.593 kb on - strand, within MPMX19_00414at 413.593 kb on - strand, within MPMX19_00414at 414.141 kb on + strandat 414.141 kb on + strandat 414.141 kb on + strandat 414.217 kb on + strandat 414.217 kb on + strandat 414.217 kb on + strandat 414.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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413,246 + -2.7
413,246 + -1.4
413,592 + MPMX19_00414 0.35 +0.8
413,593 - MPMX19_00414 0.35 -1.2
413,593 - MPMX19_00414 0.35 +0.8
413,593 - MPMX19_00414 0.35 -0.8
413,593 - MPMX19_00414 0.35 -0.6
414,141 + -0.2
414,141 + -0.8
414,141 + -0.1
414,217 + +0.8
414,217 + -0.4
414,217 + +0.8
414,218 - -0.8

Or see this region's nucleotide sequence