Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00103

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00101 and MPMX19_00102 are separated by 110 nucleotidesMPMX19_00102 and MPMX19_00103 are separated by 300 nucleotidesMPMX19_00103 and MPMX19_00104 are separated by 41 nucleotides MPMX19_00101: MPMX19_00101 - Formyl-CoA:oxalate CoA-transferase, at 107,561 to 108,811 _00101 MPMX19_00102: MPMX19_00102 - hypothetical protein, at 108,922 to 109,395 _00102 MPMX19_00103: MPMX19_00103 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 109,696 to 110,946 _00103 MPMX19_00104: MPMX19_00104 - 2-oxoglutarate dehydrogenase E1 component, at 110,988 to 113,942 _00104 Position (kb) 109 110 111Strain fitness (log2 ratio) -3 -2 -1 0 1at 108.787 kb on + strandat 108.787 kb on + strandat 108.787 kb on + strandat 108.787 kb on + strandat 108.787 kb on + strandat 108.788 kb on - strandat 108.788 kb on - strandat 108.788 kb on - strandat 108.788 kb on - strandat 108.788 kb on - strandat 108.788 kb on - strandat 108.788 kb on - strandat 108.828 kb on + strandat 108.828 kb on + strandat 108.828 kb on + strandat 108.828 kb on + strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 108.829 kb on - strandat 109.143 kb on - strand, within MPMX19_00102at 109.499 kb on - strandat 109.499 kb on - strandat 109.687 kb on + strandat 109.687 kb on + strandat 109.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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108,787 + -0.8
108,787 + -0.6
108,787 + -0.3
108,787 + -1.1
108,787 + -1.3
108,788 - -0.8
108,788 - -0.8
108,788 - +1.1
108,788 - -1.2
108,788 - -2.2
108,788 - -1.7
108,788 - -2.9
108,828 + -2.2
108,828 + -0.2
108,828 + -2.8
108,828 + -2.0
108,829 - -0.6
108,829 - -1.7
108,829 - -1.0
108,829 - -0.8
108,829 - -1.8
108,829 - -1.8
108,829 - +0.3
108,829 - -0.9
108,829 - -0.7
109,143 - MPMX19_00102 0.47 -0.7
109,499 - -0.3
109,499 - -0.6
109,687 + -0.5
109,687 + +0.9
109,689 + +1.5

Or see this region's nucleotide sequence