Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00054 and MPMX19_00055 are separated by 371 nucleotides MPMX19_00055 and MPMX19_00056 are separated by 72 nucleotides MPMX19_00056 and MPMX19_00057 are separated by 52 nucleotides MPMX19_00057 and MPMX19_00058 are separated by 18 nucleotides
MPMX19_00054: MPMX19_00054 - hypothetical protein, at 56,647 to 57,810
_00054
MPMX19_00055: MPMX19_00055 - hypothetical protein, at 58,182 to 58,685
_00055
MPMX19_00056: MPMX19_00056 - Leucine--tRNA ligase, at 58,758 to 61,322
_00056
MPMX19_00057: MPMX19_00057 - hypothetical protein, at 61,375 to 61,881
_00057
MPMX19_00058: MPMX19_00058 - hypothetical protein, at 61,900 to 62,925
_00058
Position (kb) 58
59
60
61
62 Strain fitness (log2 ratio) -1
0
1 at 57.956 kb on + strand at 57.956 kb on + strand at 57.956 kb on + strand at 57.956 kb on + strand at 57.956 kb on + strand at 57.957 kb on - strand at 57.957 kb on - strand at 57.957 kb on - strand at 57.957 kb on - strand at 57.957 kb on - strand at 57.957 kb on - strand at 58.074 kb on + strand at 58.074 kb on + strand at 58.074 kb on + strand at 58.506 kb on + strand, within MPMX19_00055 at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 57,956 + +0.7 57,956 + +0.4 57,956 + -0.1 57,956 + +0.3 57,956 + +1.1 57,957 - -0.5 57,957 - -0.6 57,957 - -1.6 57,957 - +1.1 57,957 - -1.1 57,957 - -0.1 58,074 + -0.5 58,074 + -0.7 58,074 + -0.1 58,506 + MPMX19_00055 0.64 -0.5 58,733 + +0.3 58,733 + -1.1 58,733 + -1.5 58,733 + +0.2 58,733 + -1.5 58,733 + -0.3 58,733 + -0.2 58,733 + -0.5 58,733 + -0.3 58,733 + -1.4
Or see this region's nucleotide sequence