Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS04805

Experiment: MHII; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS04800 and RR41_RS04805 are separated by 1 nucleotidesRR41_RS04805 and RR41_RS04810 are separated by 9 nucleotidesRR41_RS04810 and RR41_RS04815 are separated by 138 nucleotides RR41_RS04800: RR41_RS04800 - aminodeoxychorismate lyase, at 991,420 to 992,232 _RS04800 RR41_RS04805: RR41_RS04805 - endolytic transglycosylase MltG, at 992,234 to 993,304 _RS04805 RR41_RS04810: RR41_RS04810 - dTMP kinase, at 993,314 to 993,913 _RS04810 RR41_RS04815: RR41_RS04815 - PaaI family thioesterase, at 994,052 to 994,468 _RS04815 Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1 2 3at 991.303 kb on + strandat 991.304 kb on - strandat 991.304 kb on - strandat 991.328 kb on + strandat 991.384 kb on - strandat 991.403 kb on + strandat 991.415 kb on + strandat 991.448 kb on + strandat 991.525 kb on - strand, within RR41_RS04800at 991.701 kb on + strand, within RR41_RS04800at 991.701 kb on + strand, within RR41_RS04800at 991.702 kb on - strand, within RR41_RS04800at 991.725 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.729 kb on + strand, within RR41_RS04800at 991.730 kb on - strand, within RR41_RS04800at 991.730 kb on - strand, within RR41_RS04800at 991.730 kb on - strand, within RR41_RS04800at 991.731 kb on + strand, within RR41_RS04800at 991.731 kb on + strand, within RR41_RS04800at 991.776 kb on + strand, within RR41_RS04800at 991.776 kb on + strand, within RR41_RS04800at 991.777 kb on - strand, within RR41_RS04800at 991.779 kb on - strand, within RR41_RS04800at 991.827 kb on - strand, within RR41_RS04800at 991.862 kb on + strand, within RR41_RS04800at 991.863 kb on - strand, within RR41_RS04800at 991.869 kb on - strand, within RR41_RS04800at 991.908 kb on - strand, within RR41_RS04800at 991.919 kb on + strand, within RR41_RS04800at 991.927 kb on + strand, within RR41_RS04800at 991.929 kb on + strand, within RR41_RS04800at 991.929 kb on + strand, within RR41_RS04800at 991.930 kb on - strand, within RR41_RS04800at 991.950 kb on + strand, within RR41_RS04800at 992.078 kb on + strand, within RR41_RS04800at 993.174 kb on + strand, within RR41_RS04805at 993.200 kb on + strandat 993.200 kb on + strandat 993.200 kb on + strandat 993.912 kb on - strandat 993.978 kb on + strandat 994.005 kb on - strandat 994.009 kb on + strandat 994.009 kb on + strandat 994.010 kb on - strandat 994.010 kb on - strandat 994.141 kb on + strand, within RR41_RS04815at 994.142 kb on - strand, within RR41_RS04815at 994.157 kb on + strand, within RR41_RS04815at 994.161 kb on - strand, within RR41_RS04815at 994.198 kb on + strand, within RR41_RS04815at 994.198 kb on + strand, within RR41_RS04815at 994.198 kb on + strand, within RR41_RS04815at 994.198 kb on + strand, within RR41_RS04815at 994.198 kb on + strand, within RR41_RS04815at 994.199 kb on - strand, within RR41_RS04815at 994.199 kb on - strand, within RR41_RS04815at 994.199 kb on - strand, within RR41_RS04815at 994.199 kb on - strand, within RR41_RS04815at 994.199 kb on - strand, within RR41_RS04815at 994.213 kb on + strand, within RR41_RS04815at 994.239 kb on + strand, within RR41_RS04815at 994.240 kb on - strand, within RR41_RS04815at 994.241 kb on + strand, within RR41_RS04815at 994.242 kb on - strand, within RR41_RS04815at 994.242 kb on - strand, within RR41_RS04815at 994.252 kb on - strand, within RR41_RS04815at 994.279 kb on - strand, within RR41_RS04815at 994.284 kb on + strand, within RR41_RS04815

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII; 30C
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991,303 + +1.6
991,304 - -1.2
991,304 - -0.3
991,328 + -0.7
991,384 - -1.4
991,403 + +0.8
991,415 + +0.3
991,448 + -0.7
991,525 - RR41_RS04800 0.13 +2.2
991,701 + RR41_RS04800 0.35 +1.6
991,701 + RR41_RS04800 0.35 -1.0
991,702 - RR41_RS04800 0.35 +0.6
991,725 + RR41_RS04800 0.38 -0.1
991,729 + RR41_RS04800 0.38 +1.6
991,729 + RR41_RS04800 0.38 +1.0
991,729 + RR41_RS04800 0.38 -1.7
991,729 + RR41_RS04800 0.38 -2.4
991,729 + RR41_RS04800 0.38 -0.7
991,730 - RR41_RS04800 0.38 +0.0
991,730 - RR41_RS04800 0.38 -0.4
991,730 - RR41_RS04800 0.38 -0.6
991,731 + RR41_RS04800 0.38 +0.0
991,731 + RR41_RS04800 0.38 +0.9
991,776 + RR41_RS04800 0.44 -0.4
991,776 + RR41_RS04800 0.44 +0.6
991,777 - RR41_RS04800 0.44 -0.4
991,779 - RR41_RS04800 0.44 -2.3
991,827 - RR41_RS04800 0.50 -1.7
991,862 + RR41_RS04800 0.54 +1.0
991,863 - RR41_RS04800 0.54 +1.6
991,869 - RR41_RS04800 0.55 -1.0
991,908 - RR41_RS04800 0.60 -1.4
991,919 + RR41_RS04800 0.61 -1.2
991,927 + RR41_RS04800 0.62 -1.8
991,929 + RR41_RS04800 0.63 -0.3
991,929 + RR41_RS04800 0.63 +0.0
991,930 - RR41_RS04800 0.63 -1.1
991,950 + RR41_RS04800 0.65 -2.1
992,078 + RR41_RS04800 0.81 +1.6
993,174 + RR41_RS04805 0.88 -0.2
993,200 + -1.2
993,200 + -0.7
993,200 + -0.3
993,912 - -1.1
993,978 + +0.0
994,005 - +0.4
994,009 + -0.8
994,009 + +1.2
994,010 - +0.2
994,010 - +3.0
994,141 + RR41_RS04815 0.21 -1.3
994,142 - RR41_RS04815 0.22 +0.3
994,157 + RR41_RS04815 0.25 -0.7
994,161 - RR41_RS04815 0.26 +2.9
994,198 + RR41_RS04815 0.35 -1.2
994,198 + RR41_RS04815 0.35 -0.4
994,198 + RR41_RS04815 0.35 -0.2
994,198 + RR41_RS04815 0.35 -0.7
994,198 + RR41_RS04815 0.35 -0.7
994,199 - RR41_RS04815 0.35 +0.6
994,199 - RR41_RS04815 0.35 +1.0
994,199 - RR41_RS04815 0.35 -0.8
994,199 - RR41_RS04815 0.35 +0.3
994,199 - RR41_RS04815 0.35 -0.4
994,213 + RR41_RS04815 0.39 +0.6
994,239 + RR41_RS04815 0.45 -2.5
994,240 - RR41_RS04815 0.45 +0.6
994,241 + RR41_RS04815 0.45 +0.8
994,242 - RR41_RS04815 0.46 -0.1
994,242 - RR41_RS04815 0.46 +1.0
994,252 - RR41_RS04815 0.48 +1.6
994,279 - RR41_RS04815 0.54 +0.6
994,284 + RR41_RS04815 0.56 +1.2

Or see this region's nucleotide sequence