Experiment: MHII; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS02455 and RR41_RS02460 are separated by 57 nucleotides RR41_RS02460 and RR41_RS02465 are separated by 211 nucleotides RR41_RS02465 and RR41_RS02470 are separated by 162 nucleotides RR41_RS02470 and RR41_RS02475 are separated by 40 nucleotides
RR41_RS02455: RR41_RS02455 - lytic transglycosylase domain-containing protein, at 500,110 to 502,053
_RS02455
RR41_RS02460: RR41_RS02460 - hypothetical protein, at 502,111 to 502,773
_RS02460
RR41_RS02465: RR41_RS02465 - malate dehydrogenase, at 502,985 to 503,971
_RS02465
RR41_RS02470: RR41_RS02470 - DUF2789 domain-containing protein, at 504,134 to 504,379
_RS02470
RR41_RS02475: RR41_RS02475 - IS256-like element ISAba26 family transposase, at 504,420 to 505,628
_RS02475
Position (kb) 502
503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 501.986 kb on + strand at 501.986 kb on + strand at 501.986 kb on + strand at 501.987 kb on - strand at 501.987 kb on - strand at 501.989 kb on + strand at 501.989 kb on + strand at 501.990 kb on - strand at 501.990 kb on - strand at 502.011 kb on - strand at 502.013 kb on + strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.020 kb on + strand at 502.020 kb on + strand at 502.020 kb on + strand at 502.021 kb on - strand at 502.052 kb on - strand at 502.058 kb on - strand at 502.058 kb on - strand at 502.104 kb on + strand at 502.109 kb on - strand at 502.117 kb on + strand at 502.117 kb on + strand at 502.118 kb on - strand at 502.119 kb on + strand at 502.119 kb on + strand at 502.200 kb on - strand, within RR41_RS02460 at 502.216 kb on - strand, within RR41_RS02460 at 502.228 kb on + strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.229 kb on - strand, within RR41_RS02460 at 502.241 kb on + strand, within RR41_RS02460 at 502.242 kb on - strand, within RR41_RS02460 at 502.268 kb on + strand, within RR41_RS02460 at 502.279 kb on - strand, within RR41_RS02460 at 502.293 kb on + strand, within RR41_RS02460 at 502.293 kb on + strand, within RR41_RS02460 at 502.294 kb on - strand, within RR41_RS02460 at 502.377 kb on + strand, within RR41_RS02460 at 502.377 kb on + strand, within RR41_RS02460 at 502.378 kb on - strand, within RR41_RS02460 at 502.378 kb on - strand, within RR41_RS02460 at 502.378 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.399 kb on - strand, within RR41_RS02460 at 502.536 kb on + strand, within RR41_RS02460 at 502.542 kb on - strand, within RR41_RS02460 at 502.554 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.575 kb on + strand, within RR41_RS02460 at 502.576 kb on - strand, within RR41_RS02460 at 502.576 kb on - strand, within RR41_RS02460 at 502.576 kb on - strand, within RR41_RS02460 at 502.580 kb on + strand, within RR41_RS02460 at 502.581 kb on - strand, within RR41_RS02460 at 502.581 kb on - strand, within RR41_RS02460 at 502.613 kb on + strand, within RR41_RS02460 at 502.613 kb on + strand, within RR41_RS02460 at 502.627 kb on - strand, within RR41_RS02460 at 502.664 kb on + strand, within RR41_RS02460 at 502.668 kb on - strand, within RR41_RS02460 at 502.705 kb on + strand, within RR41_RS02460 at 502.705 kb on + strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.706 kb on - strand, within RR41_RS02460 at 502.707 kb on + strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.708 kb on - strand at 502.734 kb on + strand at 502.734 kb on + strand at 502.759 kb on - strand at 502.769 kb on - strand at 502.772 kb on - strand at 502.772 kb on - strand at 502.819 kb on + strand at 502.825 kb on + strand at 502.833 kb on - strand at 502.877 kb on + strand at 502.877 kb on + strand at 502.878 kb on - strand at 502.899 kb on - strand at 502.919 kb on + strand at 502.920 kb on - strand at 502.934 kb on - strand at 502.950 kb on + strand at 502.983 kb on - strand at 503.370 kb on + strand, within RR41_RS02465 at 503.561 kb on - strand, within RR41_RS02465 at 504.008 kb on - strand at 504.022 kb on + strand at 504.023 kb on - strand at 504.036 kb on + strand at 504.037 kb on - strand at 504.065 kb on - strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.072 kb on + strand at 504.073 kb on - strand at 504.073 kb on - strand at 504.073 kb on - strand at 504.076 kb on + strand at 504.091 kb on + strand at 504.091 kb on + strand at 504.091 kb on + strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.092 kb on - strand at 504.129 kb on + strand at 504.130 kb on - strand at 504.156 kb on + strand at 504.157 kb on - strand at 504.183 kb on + strand, within RR41_RS02470 at 504.249 kb on + strand, within RR41_RS02470 at 504.249 kb on + strand, within RR41_RS02470 at 504.332 kb on - strand, within RR41_RS02470 at 504.332 kb on - strand, within RR41_RS02470 at 504.354 kb on + strand, within RR41_RS02470 at 504.355 kb on - strand at 504.355 kb on - strand at 504.355 kb on - strand at 504.355 kb on - strand at 504.365 kb on - strand at 504.365 kb on - strand at 504.365 kb on - strand at 504.399 kb on - strand at 504.399 kb on - strand at 504.408 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII; 30C remove 501,986 + -3.1 501,986 + -1.5 501,986 + -0.1 501,987 - -3.5 501,987 - -0.1 501,989 + +0.8 501,989 + -0.9 501,990 - -3.7 501,990 - +0.6 502,011 - -2.8 502,013 + -1.6 502,014 - -0.7 502,014 - +0.8 502,014 - -1.7 502,014 - -3.1 502,014 - -0.6 502,014 - +0.3 502,020 + -0.1 502,020 + -0.3 502,020 + -2.8 502,021 - +1.9 502,052 - -0.0 502,058 - -1.9 502,058 - -0.7 502,104 + +0.2 502,109 - -0.3 502,117 + -1.9 502,117 + -0.5 502,118 - -1.1 502,119 + -2.5 502,119 + -0.7 502,200 - RR41_RS02460 0.13 +1.0 502,216 - RR41_RS02460 0.16 -2.0 502,228 + RR41_RS02460 0.18 -0.5 502,229 - RR41_RS02460 0.18 -0.3 502,229 - RR41_RS02460 0.18 -1.5 502,229 - RR41_RS02460 0.18 -1.7 502,229 - RR41_RS02460 0.18 +0.1 502,241 + RR41_RS02460 0.20 -2.8 502,242 - RR41_RS02460 0.20 -2.0 502,268 + RR41_RS02460 0.24 -1.9 502,279 - RR41_RS02460 0.25 -1.4 502,293 + RR41_RS02460 0.27 -0.0 502,293 + RR41_RS02460 0.27 +0.1 502,294 - RR41_RS02460 0.28 +0.1 502,377 + RR41_RS02460 0.40 -1.9 502,377 + RR41_RS02460 0.40 -1.3 502,378 - RR41_RS02460 0.40 -2.1 502,378 - RR41_RS02460 0.40 -0.7 502,378 - RR41_RS02460 0.40 -1.0 502,399 - RR41_RS02460 0.43 -2.1 502,399 - RR41_RS02460 0.43 -0.5 502,399 - RR41_RS02460 0.43 -0.7 502,399 - RR41_RS02460 0.43 -0.3 502,536 + RR41_RS02460 0.64 -2.5 502,542 - RR41_RS02460 0.65 -2.0 502,554 + RR41_RS02460 0.67 -1.5 502,575 + RR41_RS02460 0.70 +0.3 502,575 + RR41_RS02460 0.70 -1.5 502,575 + RR41_RS02460 0.70 -1.0 502,575 + RR41_RS02460 0.70 +1.8 502,576 - RR41_RS02460 0.70 -1.0 502,576 - RR41_RS02460 0.70 -1.0 502,576 - RR41_RS02460 0.70 -2.4 502,580 + RR41_RS02460 0.71 -1.3 502,581 - RR41_RS02460 0.71 -0.9 502,581 - RR41_RS02460 0.71 -2.0 502,613 + RR41_RS02460 0.76 -1.1 502,613 + RR41_RS02460 0.76 -2.9 502,627 - RR41_RS02460 0.78 -1.7 502,664 + RR41_RS02460 0.83 -0.7 502,668 - RR41_RS02460 0.84 -1.0 502,705 + RR41_RS02460 0.90 -0.7 502,705 + RR41_RS02460 0.90 -2.6 502,706 - RR41_RS02460 0.90 -1.6 502,706 - RR41_RS02460 0.90 -1.0 502,706 - RR41_RS02460 0.90 +0.1 502,706 - RR41_RS02460 0.90 +0.3 502,707 + -2.6 502,708 - -1.3 502,708 - -0.7 502,708 - +1.9 502,708 - -2.0 502,708 - -2.3 502,734 + -1.3 502,734 + -1.0 502,759 - -1.5 502,769 - -1.0 502,772 - -0.1 502,772 - -0.9 502,819 + +0.5 502,825 + +1.0 502,833 - -0.7 502,877 + -0.4 502,877 + +1.0 502,878 - +0.5 502,899 - +0.9 502,919 + +0.6 502,920 - +3.2 502,934 - -1.0 502,950 + -1.9 502,983 - -0.3 503,370 + RR41_RS02465 0.39 +0.3 503,561 - RR41_RS02465 0.58 -1.3 504,008 - +0.7 504,022 + -2.4 504,023 - +0.3 504,036 + -1.3 504,037 - -0.7 504,065 - -1.0 504,072 + +1.2 504,072 + -2.8 504,072 + -0.9 504,072 + -1.9 504,072 + -1.9 504,072 + -0.8 504,072 + +0.3 504,072 + +0.2 504,072 + -0.1 504,072 + +1.6 504,073 - -1.4 504,073 - -0.1 504,073 - -2.0 504,076 + -0.7 504,091 + -0.3 504,091 + +1.0 504,091 + +0.3 504,092 - -1.4 504,092 - +0.5 504,092 - +0.3 504,092 - -0.9 504,092 - -1.5 504,092 - +0.2 504,092 - -0.3 504,092 - +0.6 504,092 - -2.3 504,092 - -0.2 504,129 + +0.3 504,130 - -2.1 504,156 + -0.7 504,157 - +0.7 504,183 + RR41_RS02470 0.20 -0.3 504,249 + RR41_RS02470 0.47 +0.3 504,249 + RR41_RS02470 0.47 -0.3 504,332 - RR41_RS02470 0.80 +0.7 504,332 - RR41_RS02470 0.80 -2.0 504,354 + RR41_RS02470 0.89 -1.0 504,355 - -0.9 504,355 - +0.5 504,355 - -2.0 504,355 - +0.6 504,365 - -0.4 504,365 - -0.7 504,365 - -2.5 504,399 - -0.8 504,399 - -0.5 504,408 - -1.3
Or see this region's nucleotide sequence