Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_05725

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_05715 and HUW76_05720 are separated by 17 nucleotidesHUW76_05720 and HUW76_05725 are separated by 0 nucleotidesHUW76_05725 and HUW76_05730 are separated by 105 nucleotidesHUW76_05730 and HUW76_05735 are separated by 237 nucleotides HUW76_05715: HUW76_05715 - malonyl-ACP O-methyltransferase BioC, at 1,152,903 to 1,153,571 _05715 HUW76_05720: HUW76_05720 - DUF452 family protein, at 1,153,589 to 1,154,179 _05720 HUW76_05725: HUW76_05725 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 1,154,180 to 1,155,313 _05725 HUW76_05730: HUW76_05730 - DUF4125 family protein, at 1,155,419 to 1,156,024 _05730 HUW76_05735: HUW76_05735 - DUF4037 domain-containing protein, at 1,156,262 to 1,158,070 _05735 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1153.241 kb on - strand, within HUW76_05715at 1153.241 kb on - strand, within HUW76_05715at 1153.274 kb on - strand, within HUW76_05715at 1153.274 kb on - strand, within HUW76_05715at 1153.293 kb on + strand, within HUW76_05715at 1153.293 kb on + strand, within HUW76_05715at 1153.293 kb on + strand, within HUW76_05715at 1153.301 kb on - strand, within HUW76_05715at 1153.301 kb on - strand, within HUW76_05715at 1153.358 kb on + strand, within HUW76_05715at 1153.385 kb on - strand, within HUW76_05715at 1153.419 kb on + strand, within HUW76_05715at 1153.419 kb on + strand, within HUW76_05715at 1153.435 kb on + strand, within HUW76_05715at 1153.435 kb on + strand, within HUW76_05715at 1153.457 kb on + strand, within HUW76_05715at 1153.467 kb on + strand, within HUW76_05715at 1153.705 kb on + strand, within HUW76_05720at 1153.705 kb on + strand, within HUW76_05720at 1153.705 kb on + strand, within HUW76_05720at 1153.705 kb on + strand, within HUW76_05720at 1153.713 kb on - strand, within HUW76_05720at 1153.713 kb on - strand, within HUW76_05720at 1153.778 kb on - strand, within HUW76_05720at 1153.778 kb on - strand, within HUW76_05720at 1153.886 kb on + strand, within HUW76_05720at 1153.935 kb on - strand, within HUW76_05720at 1153.952 kb on + strand, within HUW76_05720at 1153.952 kb on + strand, within HUW76_05720at 1154.188 kb on + strandat 1154.188 kb on + strandat 1154.259 kb on + strandat 1154.259 kb on + strandat 1154.268 kb on + strandat 1154.268 kb on + strandat 1154.283 kb on - strandat 1154.283 kb on - strandat 1154.335 kb on - strand, within HUW76_05725at 1154.366 kb on - strand, within HUW76_05725at 1154.366 kb on - strand, within HUW76_05725at 1154.533 kb on - strand, within HUW76_05725at 1154.544 kb on - strand, within HUW76_05725at 1154.544 kb on - strand, within HUW76_05725at 1154.602 kb on - strand, within HUW76_05725at 1154.602 kb on - strand, within HUW76_05725at 1154.606 kb on + strand, within HUW76_05725at 1154.634 kb on + strand, within HUW76_05725at 1154.634 kb on + strand, within HUW76_05725at 1154.634 kb on + strand, within HUW76_05725at 1154.642 kb on - strand, within HUW76_05725at 1154.642 kb on - strand, within HUW76_05725at 1154.647 kb on - strand, within HUW76_05725at 1154.691 kb on + strand, within HUW76_05725at 1154.691 kb on + strand, within HUW76_05725at 1154.697 kb on - strand, within HUW76_05725at 1154.697 kb on - strand, within HUW76_05725at 1154.697 kb on - strand, within HUW76_05725at 1154.710 kb on + strand, within HUW76_05725at 1154.710 kb on + strand, within HUW76_05725at 1154.710 kb on - strand, within HUW76_05725at 1154.710 kb on - strand, within HUW76_05725at 1154.710 kb on - strand, within HUW76_05725at 1154.710 kb on - strand, within HUW76_05725at 1154.712 kb on + strand, within HUW76_05725at 1154.712 kb on + strand, within HUW76_05725at 1154.712 kb on + strand, within HUW76_05725at 1154.712 kb on + strand, within HUW76_05725at 1154.720 kb on - strand, within HUW76_05725at 1154.720 kb on - strand, within HUW76_05725at 1154.720 kb on - strand, within HUW76_05725at 1154.720 kb on - strand, within HUW76_05725at 1154.720 kb on - strand, within HUW76_05725at 1154.720 kb on - strand, within HUW76_05725at 1154.792 kb on + strand, within HUW76_05725at 1154.792 kb on + strand, within HUW76_05725at 1154.800 kb on - strand, within HUW76_05725at 1154.800 kb on - strand, within HUW76_05725at 1154.800 kb on - strand, within HUW76_05725at 1154.800 kb on - strand, within HUW76_05725at 1154.804 kb on + strand, within HUW76_05725at 1154.804 kb on + strand, within HUW76_05725at 1154.804 kb on + strand, within HUW76_05725at 1154.812 kb on - strand, within HUW76_05725at 1154.812 kb on - strand, within HUW76_05725at 1154.812 kb on - strand, within HUW76_05725at 1154.813 kb on - strand, within HUW76_05725at 1154.836 kb on - strand, within HUW76_05725at 1154.836 kb on - strand, within HUW76_05725at 1154.837 kb on - strand, within HUW76_05725at 1154.837 kb on - strand, within HUW76_05725at 1155.039 kb on + strand, within HUW76_05725at 1155.039 kb on + strand, within HUW76_05725at 1155.047 kb on - strand, within HUW76_05725at 1155.047 kb on - strand, within HUW76_05725at 1155.090 kb on + strand, within HUW76_05725at 1155.123 kb on + strand, within HUW76_05725at 1155.123 kb on + strand, within HUW76_05725at 1155.123 kb on + strand, within HUW76_05725at 1155.123 kb on + strand, within HUW76_05725at 1155.131 kb on - strand, within HUW76_05725at 1155.131 kb on - strand, within HUW76_05725at 1155.131 kb on - strand, within HUW76_05725at 1155.131 kb on - strand, within HUW76_05725at 1155.204 kb on - strandat 1155.206 kb on - strandat 1155.448 kb on + strandat 1155.567 kb on + strand, within HUW76_05730at 1155.575 kb on - strand, within HUW76_05730at 1155.625 kb on + strand, within HUW76_05730at 1155.625 kb on + strand, within HUW76_05730at 1155.633 kb on - strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.635 kb on + strand, within HUW76_05730at 1155.638 kb on - strand, within HUW76_05730at 1155.638 kb on - strand, within HUW76_05730at 1155.641 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.643 kb on - strand, within HUW76_05730at 1155.647 kb on + strand, within HUW76_05730at 1155.647 kb on + strand, within HUW76_05730at 1155.650 kb on - strand, within HUW76_05730at 1155.654 kb on + strand, within HUW76_05730at 1155.781 kb on + strand, within HUW76_05730at 1155.797 kb on - strand, within HUW76_05730at 1155.828 kb on + strand, within HUW76_05730at 1155.868 kb on - strand, within HUW76_05730at 1155.897 kb on + strand, within HUW76_05730at 1155.987 kb on + strandat 1156.044 kb on + strandat 1156.104 kb on - strandat 1156.122 kb on + strandat 1156.122 kb on + strandat 1156.134 kb on + strandat 1156.134 kb on + strandat 1156.134 kb on + strandat 1156.134 kb on + strandat 1156.142 kb on - strandat 1156.142 kb on - strandat 1156.142 kb on - strandat 1156.142 kb on - strandat 1156.142 kb on - strandat 1156.152 kb on + strandat 1156.152 kb on + strandat 1156.160 kb on - strandat 1156.160 kb on - strandat 1156.180 kb on - strandat 1156.188 kb on - strandat 1156.188 kb on - strandat 1156.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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1,153,241 - HUW76_05715 0.51 -0.1
1,153,241 - HUW76_05715 0.51 -0.4
1,153,274 - HUW76_05715 0.55 -0.2
1,153,274 - HUW76_05715 0.55 +0.2
1,153,293 + HUW76_05715 0.58 -0.2
1,153,293 + HUW76_05715 0.58 -0.2
1,153,293 + HUW76_05715 0.58 +3.0
1,153,301 - HUW76_05715 0.59 +0.2
1,153,301 - HUW76_05715 0.59 +0.2
1,153,358 + HUW76_05715 0.68 +0.6
1,153,385 - HUW76_05715 0.72 -0.5
1,153,419 + HUW76_05715 0.77 -0.0
1,153,419 + HUW76_05715 0.77 +2.6
1,153,435 + HUW76_05715 0.80 -0.4
1,153,435 + HUW76_05715 0.80 +0.7
1,153,457 + HUW76_05715 0.83 -0.1
1,153,467 + HUW76_05715 0.84 -0.1
1,153,705 + HUW76_05720 0.20 +0.5
1,153,705 + HUW76_05720 0.20 -0.4
1,153,705 + HUW76_05720 0.20 +0.0
1,153,705 + HUW76_05720 0.20 +0.6
1,153,713 - HUW76_05720 0.21 +0.1
1,153,713 - HUW76_05720 0.21 +0.1
1,153,778 - HUW76_05720 0.32 -0.3
1,153,778 - HUW76_05720 0.32 +2.1
1,153,886 + HUW76_05720 0.50 +1.2
1,153,935 - HUW76_05720 0.59 +0.3
1,153,952 + HUW76_05720 0.61 +0.5
1,153,952 + HUW76_05720 0.61 +0.5
1,154,188 + +0.5
1,154,188 + +0.2
1,154,259 + +0.6
1,154,259 + +0.6
1,154,268 + -0.9
1,154,268 + +0.3
1,154,283 - -0.7
1,154,283 - +0.4
1,154,335 - HUW76_05725 0.14 +2.3
1,154,366 - HUW76_05725 0.16 +0.2
1,154,366 - HUW76_05725 0.16 -0.5
1,154,533 - HUW76_05725 0.31 -0.0
1,154,544 - HUW76_05725 0.32 +0.4
1,154,544 - HUW76_05725 0.32 -0.5
1,154,602 - HUW76_05725 0.37 +1.3
1,154,602 - HUW76_05725 0.37 +0.0
1,154,606 + HUW76_05725 0.38 -1.8
1,154,634 + HUW76_05725 0.40 +0.5
1,154,634 + HUW76_05725 0.40 -1.4
1,154,634 + HUW76_05725 0.40 -0.1
1,154,642 - HUW76_05725 0.41 -0.6
1,154,642 - HUW76_05725 0.41 +1.1
1,154,647 - HUW76_05725 0.41 +0.1
1,154,691 + HUW76_05725 0.45 +1.1
1,154,691 + HUW76_05725 0.45 +2.5
1,154,697 - HUW76_05725 0.46 +0.0
1,154,697 - HUW76_05725 0.46 +1.3
1,154,697 - HUW76_05725 0.46 +0.7
1,154,710 + HUW76_05725 0.47 +0.9
1,154,710 + HUW76_05725 0.47 +0.3
1,154,710 - HUW76_05725 0.47 -1.6
1,154,710 - HUW76_05725 0.47 +0.0
1,154,710 - HUW76_05725 0.47 -0.2
1,154,710 - HUW76_05725 0.47 -0.2
1,154,712 + HUW76_05725 0.47 +0.8
1,154,712 + HUW76_05725 0.47 +1.0
1,154,712 + HUW76_05725 0.47 +1.5
1,154,712 + HUW76_05725 0.47 +1.9
1,154,720 - HUW76_05725 0.48 +0.4
1,154,720 - HUW76_05725 0.48 +0.5
1,154,720 - HUW76_05725 0.48 +0.2
1,154,720 - HUW76_05725 0.48 -0.3
1,154,720 - HUW76_05725 0.48 -0.8
1,154,720 - HUW76_05725 0.48 +2.1
1,154,792 + HUW76_05725 0.54 +1.0
1,154,792 + HUW76_05725 0.54 +1.7
1,154,800 - HUW76_05725 0.55 -0.1
1,154,800 - HUW76_05725 0.55 -0.5
1,154,800 - HUW76_05725 0.55 +0.3
1,154,800 - HUW76_05725 0.55 +1.3
1,154,804 + HUW76_05725 0.55 -0.4
1,154,804 + HUW76_05725 0.55 -1.0
1,154,804 + HUW76_05725 0.55 +0.2
1,154,812 - HUW76_05725 0.56 -0.5
1,154,812 - HUW76_05725 0.56 +0.1
1,154,812 - HUW76_05725 0.56 +0.2
1,154,813 - HUW76_05725 0.56 +1.0
1,154,836 - HUW76_05725 0.58 -0.3
1,154,836 - HUW76_05725 0.58 +0.9
1,154,837 - HUW76_05725 0.58 +0.4
1,154,837 - HUW76_05725 0.58 +0.1
1,155,039 + HUW76_05725 0.76 +0.6
1,155,039 + HUW76_05725 0.76 -1.2
1,155,047 - HUW76_05725 0.76 +0.2
1,155,047 - HUW76_05725 0.76 +0.1
1,155,090 + HUW76_05725 0.80 +0.6
1,155,123 + HUW76_05725 0.83 +0.2
1,155,123 + HUW76_05725 0.83 +1.2
1,155,123 + HUW76_05725 0.83 +0.8
1,155,123 + HUW76_05725 0.83 +0.5
1,155,131 - HUW76_05725 0.84 +0.5
1,155,131 - HUW76_05725 0.84 -1.8
1,155,131 - HUW76_05725 0.84 -0.1
1,155,131 - HUW76_05725 0.84 +0.0
1,155,204 - -0.0
1,155,206 - -0.6
1,155,448 + +0.4
1,155,567 + HUW76_05730 0.24 -0.1
1,155,575 - HUW76_05730 0.26 +0.3
1,155,625 + HUW76_05730 0.34 +0.5
1,155,625 + HUW76_05730 0.34 +0.2
1,155,633 - HUW76_05730 0.35 -0.9
1,155,635 + HUW76_05730 0.36 +1.3
1,155,635 + HUW76_05730 0.36 +0.4
1,155,635 + HUW76_05730 0.36 +0.4
1,155,635 + HUW76_05730 0.36 -1.3
1,155,635 + HUW76_05730 0.36 +0.4
1,155,635 + HUW76_05730 0.36 -0.1
1,155,635 + HUW76_05730 0.36 -2.0
1,155,635 + HUW76_05730 0.36 +0.8
1,155,635 + HUW76_05730 0.36 +0.1
1,155,635 + HUW76_05730 0.36 +0.8
1,155,635 + HUW76_05730 0.36 +0.9
1,155,635 + HUW76_05730 0.36 +0.9
1,155,635 + HUW76_05730 0.36 +0.4
1,155,635 + HUW76_05730 0.36 +0.5
1,155,635 + HUW76_05730 0.36 +0.8
1,155,635 + HUW76_05730 0.36 -0.1
1,155,635 + HUW76_05730 0.36 +1.1
1,155,635 + HUW76_05730 0.36 +0.5
1,155,635 + HUW76_05730 0.36 +0.2
1,155,638 - HUW76_05730 0.36 -0.1
1,155,638 - HUW76_05730 0.36 -0.1
1,155,641 - HUW76_05730 0.37 -1.1
1,155,643 - HUW76_05730 0.37 -1.0
1,155,643 - HUW76_05730 0.37 +0.3
1,155,643 - HUW76_05730 0.37 -0.1
1,155,643 - HUW76_05730 0.37 +0.2
1,155,643 - HUW76_05730 0.37 +0.1
1,155,643 - HUW76_05730 0.37 -0.1
1,155,643 - HUW76_05730 0.37 -0.7
1,155,643 - HUW76_05730 0.37 -0.4
1,155,643 - HUW76_05730 0.37 +0.3
1,155,643 - HUW76_05730 0.37 -0.1
1,155,643 - HUW76_05730 0.37 +0.2
1,155,643 - HUW76_05730 0.37 -0.1
1,155,647 + HUW76_05730 0.38 +0.5
1,155,647 + HUW76_05730 0.38 +0.2
1,155,650 - HUW76_05730 0.38 -0.4
1,155,654 + HUW76_05730 0.39 +3.8
1,155,781 + HUW76_05730 0.60 +0.2
1,155,797 - HUW76_05730 0.62 -0.2
1,155,828 + HUW76_05730 0.67 +0.7
1,155,868 - HUW76_05730 0.74 -0.2
1,155,897 + HUW76_05730 0.79 +1.1
1,155,987 + -0.3
1,156,044 + -0.2
1,156,104 - +0.0
1,156,122 + -0.4
1,156,122 + -0.1
1,156,134 + -0.1
1,156,134 + +0.1
1,156,134 + -0.2
1,156,134 + -0.1
1,156,142 - -0.2
1,156,142 - -1.5
1,156,142 - -0.4
1,156,142 - -0.6
1,156,142 - -0.6
1,156,152 + +0.7
1,156,152 + +0.6
1,156,160 - -0.1
1,156,160 - -1.6
1,156,180 - -0.1
1,156,188 - -0.5
1,156,188 - -1.1
1,156,265 + +0.2

Or see this region's nucleotide sequence