Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_04455 and HUW76_04460 overlap by 1 nucleotides HUW76_04460 and HUW76_04465 are separated by 48 nucleotides HUW76_04465 and HUW76_04470 are separated by 209 nucleotides
HUW76_04455: HUW76_04455 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 898,178 to 899,230
_04455
HUW76_04460: HUW76_04460 - elongation factor P, at 899,230 to 899,793
_04460
HUW76_04465: HUW76_04465 - hypothetical protein, at 899,842 to 900,231
_04465
HUW76_04470: HUW76_04470 - flavodoxin, at 900,441 to 900,944
_04470
Position (kb) 899
900 Strain fitness (log2 ratio) -1
0
1
2 at 899.209 kb on + strand at 899.809 kb on - strand at 899.881 kb on + strand, within HUW76_04465 at 899.884 kb on + strand, within HUW76_04465 at 899.926 kb on + strand, within HUW76_04465 at 899.926 kb on + strand, within HUW76_04465 at 899.934 kb on - strand, within HUW76_04465 at 900.085 kb on - strand, within HUW76_04465 at 900.136 kb on + strand, within HUW76_04465 at 900.136 kb on + strand, within HUW76_04465 at 900.368 kb on - strand at 900.586 kb on - strand, within HUW76_04470 at 900.733 kb on - strand, within HUW76_04470 at 900.755 kb on - strand, within HUW76_04470 at 900.765 kb on - strand, within HUW76_04470 at 900.765 kb on - strand, within HUW76_04470
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 899,209 + -0.2 899,809 - +0.2 899,881 + HUW76_04465 0.10 -0.4 899,884 + HUW76_04465 0.11 +1.9 899,926 + HUW76_04465 0.22 +1.2 899,926 + HUW76_04465 0.22 +0.7 899,934 - HUW76_04465 0.24 -0.5 900,085 - HUW76_04465 0.62 -0.4 900,136 + HUW76_04465 0.75 +2.0 900,136 + HUW76_04465 0.75 +0.6 900,368 - -0.4 900,586 - HUW76_04470 0.29 -0.2 900,733 - HUW76_04470 0.58 -0.3 900,755 - HUW76_04470 0.62 +0.4 900,765 - HUW76_04470 0.64 -0.2 900,765 - HUW76_04470 0.64 -1.1
Or see this region's nucleotide sequence