Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03470

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03455 and HUW76_03460 are separated by 11 nucleotidesHUW76_03460 and HUW76_03465 are separated by 12 nucleotidesHUW76_03465 and HUW76_03470 overlap by 14 nucleotidesHUW76_03470 and HUW76_03475 are separated by 9 nucleotidesHUW76_03475 and HUW76_03480 are separated by 116 nucleotidesHUW76_03480 and HUW76_03485 are separated by 68 nucleotides HUW76_03455: HUW76_03455 - DUF4376 domain-containing protein, at 696,397 to 697,059 _03455 HUW76_03460: HUW76_03460 - M15 family metallopeptidase, at 697,071 to 697,502 _03460 HUW76_03465: HUW76_03465 - hypothetical protein, at 697,515 to 697,886 _03465 HUW76_03470: HUW76_03470 - DUF1353 domain-containing protein, at 697,873 to 698,325 _03470 HUW76_03475: HUW76_03475 - phage holin family protein, at 698,335 to 698,790 _03475 HUW76_03480: HUW76_03480 - DUF1311 domain-containing protein, at 698,907 to 699,122 _03480 HUW76_03485: HUW76_03485 - pyridoxamine 5'-phosphate oxidase family protein, at 699,191 to 699,592 _03485 Position (kb) 697 698 699Strain fitness (log2 ratio) -2 -1 0 1 2 3at 696.925 kb on - strand, within HUW76_03455at 696.925 kb on - strand, within HUW76_03455at 697.102 kb on + strandat 697.102 kb on + strandat 697.102 kb on + strandat 697.102 kb on + strandat 697.102 kb on + strandat 697.102 kb on + strandat 697.110 kb on - strandat 697.120 kb on - strand, within HUW76_03460at 697.120 kb on - strand, within HUW76_03460at 697.172 kb on + strand, within HUW76_03460at 697.172 kb on + strand, within HUW76_03460at 697.200 kb on - strand, within HUW76_03460at 697.200 kb on - strand, within HUW76_03460at 697.252 kb on + strand, within HUW76_03460at 697.252 kb on + strand, within HUW76_03460at 697.259 kb on + strand, within HUW76_03460at 697.259 kb on + strand, within HUW76_03460at 697.260 kb on - strand, within HUW76_03460at 697.260 kb on - strand, within HUW76_03460at 697.267 kb on - strand, within HUW76_03460at 697.267 kb on - strand, within HUW76_03460at 697.305 kb on + strand, within HUW76_03460at 697.357 kb on + strand, within HUW76_03460at 697.385 kb on + strand, within HUW76_03460at 697.393 kb on - strand, within HUW76_03460at 697.393 kb on - strand, within HUW76_03460at 697.393 kb on - strand, within HUW76_03460at 697.441 kb on + strand, within HUW76_03460at 697.545 kb on + strandat 697.573 kb on - strand, within HUW76_03465at 697.592 kb on - strand, within HUW76_03465at 697.634 kb on + strand, within HUW76_03465at 697.654 kb on + strand, within HUW76_03465at 697.654 kb on + strand, within HUW76_03465at 697.654 kb on + strand, within HUW76_03465at 697.654 kb on + strand, within HUW76_03465at 697.666 kb on + strand, within HUW76_03465at 697.666 kb on + strand, within HUW76_03465at 697.666 kb on + strand, within HUW76_03465at 697.674 kb on - strand, within HUW76_03465at 697.674 kb on - strand, within HUW76_03465at 697.694 kb on + strand, within HUW76_03465at 697.712 kb on + strand, within HUW76_03465at 697.712 kb on + strand, within HUW76_03465at 697.712 kb on + strand, within HUW76_03465at 697.720 kb on - strand, within HUW76_03465at 697.721 kb on + strand, within HUW76_03465at 697.721 kb on + strand, within HUW76_03465at 697.729 kb on - strand, within HUW76_03465at 697.729 kb on - strand, within HUW76_03465at 697.802 kb on + strand, within HUW76_03465at 697.802 kb on + strand, within HUW76_03465at 697.832 kb on + strand, within HUW76_03465at 697.832 kb on + strand, within HUW76_03465at 697.832 kb on + strand, within HUW76_03465at 697.832 kb on + strand, within HUW76_03465at 697.927 kb on + strand, within HUW76_03470at 697.943 kb on - strand, within HUW76_03470at 697.998 kb on - strand, within HUW76_03470at 697.998 kb on - strand, within HUW76_03470at 698.012 kb on + strand, within HUW76_03470at 698.012 kb on + strand, within HUW76_03470at 698.013 kb on + strand, within HUW76_03470at 698.041 kb on - strand, within HUW76_03470at 698.041 kb on - strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.098 kb on + strand, within HUW76_03470at 698.106 kb on - strand, within HUW76_03470at 698.106 kb on - strand, within HUW76_03470at 698.165 kb on - strand, within HUW76_03470at 698.165 kb on - strand, within HUW76_03470at 698.173 kb on - strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.181 kb on + strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.189 kb on - strand, within HUW76_03470at 698.196 kb on - strand, within HUW76_03470at 698.199 kb on - strand, within HUW76_03470at 698.267 kb on + strand, within HUW76_03470at 698.286 kb on + strandat 698.286 kb on + strandat 698.286 kb on + strandat 698.286 kb on + strandat 698.286 kb on + strandat 698.289 kb on - strandat 698.289 kb on - strandat 698.292 kb on - strandat 698.292 kb on - strandat 698.328 kb on - strandat 698.328 kb on - strandat 698.328 kb on - strandat 698.328 kb on - strandat 698.362 kb on - strandat 698.362 kb on - strandat 698.378 kb on + strandat 698.441 kb on + strand, within HUW76_03475at 698.564 kb on + strand, within HUW76_03475at 698.564 kb on + strand, within HUW76_03475at 698.596 kb on + strand, within HUW76_03475at 698.605 kb on + strand, within HUW76_03475at 698.628 kb on + strand, within HUW76_03475at 698.632 kb on - strand, within HUW76_03475at 698.632 kb on - strand, within HUW76_03475at 698.669 kb on + strand, within HUW76_03475at 698.670 kb on - strand, within HUW76_03475at 698.809 kb on + strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 698.907 kb on - strandat 699.094 kb on + strand, within HUW76_03480at 699.094 kb on + strand, within HUW76_03480at 699.275 kb on + strand, within HUW76_03485at 699.275 kb on + strand, within HUW76_03485at 699.293 kb on - strand, within HUW76_03485at 699.293 kb on - strand, within HUW76_03485at 699.309 kb on + strand, within HUW76_03485

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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696,925 - HUW76_03455 0.80 +0.5
696,925 - HUW76_03455 0.80 +0.3
697,102 + -1.3
697,102 + -1.9
697,102 + -0.1
697,102 + -0.5
697,102 + -1.1
697,102 + -1.1
697,110 - +0.9
697,120 - HUW76_03460 0.11 +1.4
697,120 - HUW76_03460 0.11 +0.4
697,172 + HUW76_03460 0.23 -0.8
697,172 + HUW76_03460 0.23 -0.0
697,200 - HUW76_03460 0.30 -0.2
697,200 - HUW76_03460 0.30 -1.0
697,252 + HUW76_03460 0.42 -1.1
697,252 + HUW76_03460 0.42 -1.0
697,259 + HUW76_03460 0.44 -2.4
697,259 + HUW76_03460 0.44 -1.3
697,260 - HUW76_03460 0.44 +0.3
697,260 - HUW76_03460 0.44 +0.1
697,267 - HUW76_03460 0.45 +0.1
697,267 - HUW76_03460 0.45 +1.4
697,305 + HUW76_03460 0.54 -0.2
697,357 + HUW76_03460 0.66 -0.4
697,385 + HUW76_03460 0.73 -1.1
697,393 - HUW76_03460 0.75 +0.5
697,393 - HUW76_03460 0.75 -0.0
697,393 - HUW76_03460 0.75 +1.2
697,441 + HUW76_03460 0.86 -0.7
697,545 + -0.2
697,573 - HUW76_03465 0.16 -1.0
697,592 - HUW76_03465 0.21 +2.5
697,634 + HUW76_03465 0.32 -0.4
697,654 + HUW76_03465 0.37 -1.0
697,654 + HUW76_03465 0.37 +0.7
697,654 + HUW76_03465 0.37 -1.6
697,654 + HUW76_03465 0.37 -0.7
697,666 + HUW76_03465 0.41 -0.2
697,666 + HUW76_03465 0.41 -1.4
697,666 + HUW76_03465 0.41 -0.8
697,674 - HUW76_03465 0.43 +0.1
697,674 - HUW76_03465 0.43 +1.0
697,694 + HUW76_03465 0.48 -0.7
697,712 + HUW76_03465 0.53 -0.3
697,712 + HUW76_03465 0.53 -1.0
697,712 + HUW76_03465 0.53 -1.4
697,720 - HUW76_03465 0.55 +0.1
697,721 + HUW76_03465 0.55 -1.6
697,721 + HUW76_03465 0.55 -1.1
697,729 - HUW76_03465 0.58 +1.0
697,729 - HUW76_03465 0.58 +0.7
697,802 + HUW76_03465 0.77 +0.1
697,802 + HUW76_03465 0.77 -0.1
697,832 + HUW76_03465 0.85 -0.1
697,832 + HUW76_03465 0.85 -0.8
697,832 + HUW76_03465 0.85 +0.5
697,832 + HUW76_03465 0.85 -0.2
697,927 + HUW76_03470 0.12 -0.2
697,943 - HUW76_03470 0.15 +0.7
697,998 - HUW76_03470 0.28 +3.3
697,998 - HUW76_03470 0.28 +0.1
698,012 + HUW76_03470 0.31 -0.2
698,012 + HUW76_03470 0.31 +0.9
698,013 + HUW76_03470 0.31 +0.3
698,041 - HUW76_03470 0.37 -0.4
698,041 - HUW76_03470 0.37 -0.4
698,098 + HUW76_03470 0.50 +0.0
698,098 + HUW76_03470 0.50 -0.2
698,098 + HUW76_03470 0.50 +0.2
698,098 + HUW76_03470 0.50 +0.2
698,098 + HUW76_03470 0.50 -0.9
698,098 + HUW76_03470 0.50 -0.7
698,098 + HUW76_03470 0.50 -0.3
698,106 - HUW76_03470 0.51 +0.3
698,106 - HUW76_03470 0.51 -0.4
698,165 - HUW76_03470 0.64 +0.4
698,165 - HUW76_03470 0.64 -0.2
698,173 - HUW76_03470 0.66 +1.5
698,181 + HUW76_03470 0.68 -0.3
698,181 + HUW76_03470 0.68 +0.3
698,181 + HUW76_03470 0.68 -0.9
698,181 + HUW76_03470 0.68 +0.9
698,181 + HUW76_03470 0.68 +0.4
698,181 + HUW76_03470 0.68 +0.3
698,181 + HUW76_03470 0.68 +2.5
698,181 + HUW76_03470 0.68 +0.6
698,181 + HUW76_03470 0.68 -2.2
698,181 + HUW76_03470 0.68 -1.5
698,181 + HUW76_03470 0.68 +0.3
698,181 + HUW76_03470 0.68 +0.4
698,181 + HUW76_03470 0.68 +0.5
698,181 + HUW76_03470 0.68 +0.7
698,181 + HUW76_03470 0.68 +0.0
698,181 + HUW76_03470 0.68 -0.7
698,181 + HUW76_03470 0.68 -0.4
698,181 + HUW76_03470 0.68 -0.4
698,181 + HUW76_03470 0.68 +0.1
698,181 + HUW76_03470 0.68 +1.4
698,181 + HUW76_03470 0.68 +0.3
698,181 + HUW76_03470 0.68 -0.3
698,181 + HUW76_03470 0.68 -1.2
698,189 - HUW76_03470 0.70 +0.2
698,189 - HUW76_03470 0.70 +0.5
698,189 - HUW76_03470 0.70 +0.2
698,189 - HUW76_03470 0.70 +0.0
698,189 - HUW76_03470 0.70 +1.9
698,189 - HUW76_03470 0.70 -0.4
698,189 - HUW76_03470 0.70 +0.4
698,189 - HUW76_03470 0.70 +0.4
698,189 - HUW76_03470 0.70 +0.5
698,189 - HUW76_03470 0.70 +1.3
698,189 - HUW76_03470 0.70 +0.3
698,189 - HUW76_03470 0.70 +0.5
698,189 - HUW76_03470 0.70 +0.2
698,189 - HUW76_03470 0.70 +1.1
698,189 - HUW76_03470 0.70 +0.1
698,196 - HUW76_03470 0.71 +0.8
698,199 - HUW76_03470 0.72 +1.0
698,267 + HUW76_03470 0.87 +0.5
698,286 + -0.4
698,286 + -1.0
698,286 + +0.4
698,286 + -0.9
698,286 + -0.4
698,289 - +3.3
698,289 - +1.8
698,292 - +2.1
698,292 - +1.2
698,328 - +1.1
698,328 - +1.2
698,328 - +0.5
698,328 - +1.4
698,362 - +1.5
698,362 - +0.9
698,378 + -0.0
698,441 + HUW76_03475 0.23 -0.5
698,564 + HUW76_03475 0.50 +0.2
698,564 + HUW76_03475 0.50 -0.2
698,596 + HUW76_03475 0.57 -0.7
698,605 + HUW76_03475 0.59 -0.6
698,628 + HUW76_03475 0.64 -0.5
698,632 - HUW76_03475 0.65 +0.5
698,632 - HUW76_03475 0.65 +0.7
698,669 + HUW76_03475 0.73 +0.1
698,670 - HUW76_03475 0.73 +0.2
698,809 + -0.2
698,907 - -0.0
698,907 - -0.6
698,907 - -0.0
698,907 - -0.5
698,907 - -0.1
698,907 - -0.1
698,907 - -0.4
698,907 - -0.2
699,094 + HUW76_03480 0.87 -0.8
699,094 + HUW76_03480 0.87 +0.5
699,275 + HUW76_03485 0.21 +0.9
699,275 + HUW76_03485 0.21 +0.6
699,293 - HUW76_03485 0.25 +1.2
699,293 - HUW76_03485 0.25 +1.0
699,309 + HUW76_03485 0.29 +0.7

Or see this region's nucleotide sequence