Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02465

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02460 and HUW76_02465 are separated by 233 nucleotidesHUW76_02465 and HUW76_02470 are separated by 295 nucleotides HUW76_02460: HUW76_02460 - sensor histidine kinase, at 492,380 to 494,038 _02460 HUW76_02465: HUW76_02465 - HTH domain-containing protein, at 494,272 to 495,252 _02465 HUW76_02470: HUW76_02470 - autotransporter domain-containing protein, at 495,548 to 503,014 _02470 Position (kb) 494 495 496Strain fitness (log2 ratio) -1 0 1 2at 493.283 kb on + strand, within HUW76_02460at 493.286 kb on - strand, within HUW76_02460at 493.294 kb on - strand, within HUW76_02460at 493.316 kb on + strand, within HUW76_02460at 493.317 kb on + strand, within HUW76_02460at 493.317 kb on + strand, within HUW76_02460at 493.439 kb on + strand, within HUW76_02460at 493.473 kb on + strand, within HUW76_02460at 493.485 kb on - strand, within HUW76_02460at 493.557 kb on - strand, within HUW76_02460at 493.682 kb on + strand, within HUW76_02460at 493.682 kb on + strand, within HUW76_02460at 493.725 kb on + strand, within HUW76_02460at 493.733 kb on - strand, within HUW76_02460at 493.733 kb on - strand, within HUW76_02460at 493.733 kb on - strand, within HUW76_02460at 493.755 kb on + strand, within HUW76_02460at 493.893 kb on + strandat 493.893 kb on + strandat 494.020 kb on + strandat 494.020 kb on - strandat 494.020 kb on - strandat 494.034 kb on - strandat 494.034 kb on - strandat 494.060 kb on + strandat 494.068 kb on - strandat 494.068 kb on - strandat 494.110 kb on - strandat 494.135 kb on - strandat 494.150 kb on + strandat 494.158 kb on - strandat 494.219 kb on + strandat 494.219 kb on + strandat 494.226 kb on - strandat 494.241 kb on + strandat 494.391 kb on + strand, within HUW76_02465at 494.391 kb on + strand, within HUW76_02465at 494.397 kb on + strand, within HUW76_02465at 494.405 kb on - strand, within HUW76_02465at 494.405 kb on - strand, within HUW76_02465at 494.405 kb on - strand, within HUW76_02465at 494.405 kb on - strand, within HUW76_02465at 494.435 kb on - strand, within HUW76_02465at 494.455 kb on - strand, within HUW76_02465at 494.481 kb on + strand, within HUW76_02465at 494.489 kb on - strand, within HUW76_02465at 494.489 kb on - strand, within HUW76_02465at 494.495 kb on + strand, within HUW76_02465at 494.495 kb on + strand, within HUW76_02465at 494.519 kb on - strand, within HUW76_02465at 494.617 kb on + strand, within HUW76_02465at 494.644 kb on + strand, within HUW76_02465at 494.644 kb on + strand, within HUW76_02465at 494.646 kb on + strand, within HUW76_02465at 494.646 kb on + strand, within HUW76_02465at 494.702 kb on - strand, within HUW76_02465at 494.707 kb on + strand, within HUW76_02465at 494.707 kb on + strand, within HUW76_02465at 494.801 kb on + strand, within HUW76_02465at 494.801 kb on + strand, within HUW76_02465at 494.809 kb on - strand, within HUW76_02465at 494.855 kb on + strand, within HUW76_02465at 494.855 kb on + strand, within HUW76_02465at 494.855 kb on + strand, within HUW76_02465at 494.863 kb on - strand, within HUW76_02465at 494.863 kb on - strand, within HUW76_02465at 494.881 kb on - strand, within HUW76_02465at 494.886 kb on - strand, within HUW76_02465at 494.892 kb on + strand, within HUW76_02465at 494.905 kb on - strand, within HUW76_02465at 494.905 kb on - strand, within HUW76_02465at 494.905 kb on - strand, within HUW76_02465at 494.907 kb on + strand, within HUW76_02465at 494.907 kb on + strand, within HUW76_02465at 494.927 kb on - strand, within HUW76_02465at 494.927 kb on - strand, within HUW76_02465at 494.929 kb on - strand, within HUW76_02465at 494.931 kb on + strand, within HUW76_02465at 494.932 kb on - strand, within HUW76_02465at 494.941 kb on + strand, within HUW76_02465at 495.034 kb on + strand, within HUW76_02465at 495.043 kb on - strand, within HUW76_02465at 495.047 kb on + strand, within HUW76_02465at 495.247 kb on + strandat 495.247 kb on + strandat 495.518 kb on + strandat 495.619 kb on + strandat 495.626 kb on + strandat 495.626 kb on + strandat 495.676 kb on + strandat 495.676 kb on + strandat 495.676 kb on + strandat 495.676 kb on + strandat 495.684 kb on - strandat 495.684 kb on - strandat 495.684 kb on - strandat 495.711 kb on - strandat 495.723 kb on - strandat 495.723 kb on - strandat 495.780 kb on + strandat 495.811 kb on - strandat 495.811 kb on - strandat 495.886 kb on + strandat 496.013 kb on + strandat 496.013 kb on + strandat 496.017 kb on + strandat 496.154 kb on - strandat 496.154 kb on - strandat 496.163 kb on + strandat 496.163 kb on + strandat 496.163 kb on + strandat 496.170 kb on - strandat 496.220 kb on - strandat 496.230 kb on - strandat 496.242 kb on + strandat 496.242 kb on + strandat 496.242 kb on + strandat 496.242 kb on + strandat 496.250 kb on + strandat 496.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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493,283 + HUW76_02460 0.54 -0.1
493,286 - HUW76_02460 0.55 +0.3
493,294 - HUW76_02460 0.55 +0.7
493,316 + HUW76_02460 0.56 +0.0
493,317 + HUW76_02460 0.56 +0.6
493,317 + HUW76_02460 0.56 -0.6
493,439 + HUW76_02460 0.64 -0.9
493,473 + HUW76_02460 0.66 -0.2
493,485 - HUW76_02460 0.67 +0.9
493,557 - HUW76_02460 0.71 +0.9
493,682 + HUW76_02460 0.78 -0.8
493,682 + HUW76_02460 0.78 -0.1
493,725 + HUW76_02460 0.81 -0.1
493,733 - HUW76_02460 0.82 -0.3
493,733 - HUW76_02460 0.82 +2.3
493,733 - HUW76_02460 0.82 +0.1
493,755 + HUW76_02460 0.83 -0.2
493,893 + +0.3
493,893 + +0.1
494,020 + -0.2
494,020 - -0.5
494,020 - +0.5
494,034 - -0.6
494,034 - +0.2
494,060 + +1.1
494,068 - +0.4
494,068 - +0.7
494,110 - +0.4
494,135 - +0.8
494,150 + -0.3
494,158 - +0.5
494,219 + -0.2
494,219 + +0.1
494,226 - +1.0
494,241 + +0.5
494,391 + HUW76_02465 0.12 +0.4
494,391 + HUW76_02465 0.12 +0.3
494,397 + HUW76_02465 0.13 -0.2
494,405 - HUW76_02465 0.14 +0.6
494,405 - HUW76_02465 0.14 +0.4
494,405 - HUW76_02465 0.14 +0.2
494,405 - HUW76_02465 0.14 +0.9
494,435 - HUW76_02465 0.17 +0.5
494,455 - HUW76_02465 0.19 +1.5
494,481 + HUW76_02465 0.21 +0.7
494,489 - HUW76_02465 0.22 +0.7
494,489 - HUW76_02465 0.22 +1.2
494,495 + HUW76_02465 0.23 -0.0
494,495 + HUW76_02465 0.23 +0.3
494,519 - HUW76_02465 0.25 +0.6
494,617 + HUW76_02465 0.35 +0.4
494,644 + HUW76_02465 0.38 -0.1
494,644 + HUW76_02465 0.38 -0.7
494,646 + HUW76_02465 0.38 -0.0
494,646 + HUW76_02465 0.38 -0.5
494,702 - HUW76_02465 0.44 +1.4
494,707 + HUW76_02465 0.44 -0.7
494,707 + HUW76_02465 0.44 -0.0
494,801 + HUW76_02465 0.54 +0.3
494,801 + HUW76_02465 0.54 -0.5
494,809 - HUW76_02465 0.55 +0.9
494,855 + HUW76_02465 0.59 -0.3
494,855 + HUW76_02465 0.59 +0.3
494,855 + HUW76_02465 0.59 +0.0
494,863 - HUW76_02465 0.60 +2.0
494,863 - HUW76_02465 0.60 +2.4
494,881 - HUW76_02465 0.62 +0.5
494,886 - HUW76_02465 0.63 +0.4
494,892 + HUW76_02465 0.63 +0.6
494,905 - HUW76_02465 0.65 +0.8
494,905 - HUW76_02465 0.65 +0.5
494,905 - HUW76_02465 0.65 +0.8
494,907 + HUW76_02465 0.65 +0.2
494,907 + HUW76_02465 0.65 -0.1
494,927 - HUW76_02465 0.67 +0.5
494,927 - HUW76_02465 0.67 -0.0
494,929 - HUW76_02465 0.67 +0.4
494,931 + HUW76_02465 0.67 -0.0
494,932 - HUW76_02465 0.67 -1.5
494,941 + HUW76_02465 0.68 -0.7
495,034 + HUW76_02465 0.78 -0.2
495,043 - HUW76_02465 0.79 +0.2
495,047 + HUW76_02465 0.79 +0.4
495,247 + +0.6
495,247 + +0.0
495,518 + -0.2
495,619 + -0.5
495,626 + -0.3
495,626 + -0.3
495,676 + +0.0
495,676 + -0.1
495,676 + -0.6
495,676 + +0.0
495,684 - +1.7
495,684 - +1.5
495,684 - +0.2
495,711 - +0.5
495,723 - +2.4
495,723 - +0.1
495,780 + -0.6
495,811 - +0.3
495,811 - +0.7
495,886 + +0.8
496,013 + -0.4
496,013 + -0.6
496,017 + -0.5
496,154 - +0.3
496,154 - +0.6
496,163 + +0.3
496,163 + +1.0
496,163 + -1.3
496,170 - +0.3
496,220 - +0.2
496,230 - -0.3
496,242 + -0.3
496,242 + -0.1
496,242 + +0.1
496,242 + -0.2
496,250 + -0.1
496,250 - +0.4

Or see this region's nucleotide sequence