Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_02215 and HUW76_02220 are separated by 23 nucleotides HUW76_02220 and HUW76_02225 are separated by 222 nucleotides HUW76_02225 and HUW76_02230 overlap by 1 nucleotides
HUW76_02215: HUW76_02215 - hypothetical protein, at 446,367 to 446,843
_02215
HUW76_02220: HUW76_02220 - hypothetical protein, at 446,867 to 447,346
_02220
HUW76_02225: HUW76_02225 - phosphate acyltransferase PlsX, at 447,569 to 448,567
_02225
HUW76_02230: HUW76_02230 - ketoacyl-ACP synthase III, at 448,567 to 449,553
_02230
Position (kb) 447
448
449 Strain fitness (log2 ratio) -1
0
1 at 446.573 kb on + strand, within HUW76_02215 at 446.573 kb on + strand, within HUW76_02215 at 446.635 kb on + strand, within HUW76_02215 at 446.635 kb on + strand, within HUW76_02215 at 446.645 kb on + strand, within HUW76_02215 at 446.739 kb on + strand, within HUW76_02215 at 446.791 kb on + strand, within HUW76_02215 at 446.791 kb on + strand, within HUW76_02215 at 446.800 kb on - strand at 446.800 kb on - strand at 446.800 kb on - strand at 446.842 kb on - strand at 446.842 kb on - strand at 446.949 kb on + strand, within HUW76_02220 at 446.956 kb on - strand, within HUW76_02220 at 447.014 kb on + strand, within HUW76_02220 at 447.014 kb on + strand, within HUW76_02220 at 447.151 kb on - strand, within HUW76_02220 at 447.151 kb on - strand, within HUW76_02220 at 447.189 kb on + strand, within HUW76_02220 at 447.189 kb on + strand, within HUW76_02220 at 447.197 kb on - strand, within HUW76_02220 at 447.197 kb on - strand, within HUW76_02220 at 447.255 kb on + strand, within HUW76_02220 at 447.255 kb on + strand, within HUW76_02220 at 447.290 kb on + strand, within HUW76_02220 at 447.290 kb on + strand, within HUW76_02220 at 447.423 kb on + strand at 447.423 kb on + strand at 449.553 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 446,573 + HUW76_02215 0.43 -0.4 446,573 + HUW76_02215 0.43 +0.9 446,635 + HUW76_02215 0.56 -0.3 446,635 + HUW76_02215 0.56 -0.3 446,645 + HUW76_02215 0.58 -0.1 446,739 + HUW76_02215 0.78 +0.4 446,791 + HUW76_02215 0.89 -0.1 446,791 + HUW76_02215 0.89 -0.4 446,800 - +0.3 446,800 - +1.7 446,800 - +1.3 446,842 - +0.8 446,842 - +1.3 446,949 + HUW76_02220 0.17 -0.5 446,956 - HUW76_02220 0.19 +1.2 447,014 + HUW76_02220 0.31 -0.1 447,014 + HUW76_02220 0.31 +0.1 447,151 - HUW76_02220 0.59 +0.8 447,151 - HUW76_02220 0.59 +0.2 447,189 + HUW76_02220 0.67 -0.6 447,189 + HUW76_02220 0.67 -0.2 447,197 - HUW76_02220 0.69 -1.2 447,197 - HUW76_02220 0.69 +0.7 447,255 + HUW76_02220 0.81 +0.9 447,255 + HUW76_02220 0.81 +0.4 447,290 + HUW76_02220 0.88 -0.2 447,290 + HUW76_02220 0.88 +0.2 447,423 + -0.5 447,423 + -0.7 449,553 + -0.3
Or see this region's nucleotide sequence