Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02175

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02170 and HUW76_02175 are separated by 233 nucleotidesHUW76_02175 and HUW76_02180 are separated by 164 nucleotidesHUW76_02180 and HUW76_02185 are separated by 81 nucleotides HUW76_02170: HUW76_02170 - hypothetical protein, at 439,511 to 440,662 _02170 HUW76_02175: HUW76_02175 - helicase, at 440,896 to 441,618 _02175 HUW76_02180: HUW76_02180 - hypothetical protein, at 441,783 to 441,953 _02180 HUW76_02185: HUW76_02185 - helicase, at 442,035 to 442,706 _02185 Position (kb) 440 441 442Strain fitness (log2 ratio) -1 0 1 2at 439.910 kb on + strand, within HUW76_02170at 439.910 kb on + strand, within HUW76_02170at 439.910 kb on + strand, within HUW76_02170at 439.955 kb on + strand, within HUW76_02170at 439.955 kb on + strand, within HUW76_02170at 439.955 kb on + strand, within HUW76_02170at 440.028 kb on + strand, within HUW76_02170at 440.062 kb on + strand, within HUW76_02170at 440.062 kb on + strand, within HUW76_02170at 440.070 kb on - strand, within HUW76_02170at 440.088 kb on + strand, within HUW76_02170at 440.088 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.132 kb on + strand, within HUW76_02170at 440.156 kb on - strand, within HUW76_02170at 440.221 kb on + strand, within HUW76_02170at 440.223 kb on + strand, within HUW76_02170at 440.223 kb on + strand, within HUW76_02170at 440.231 kb on - strand, within HUW76_02170at 440.231 kb on - strand, within HUW76_02170at 440.238 kb on + strand, within HUW76_02170at 440.238 kb on + strand, within HUW76_02170at 440.241 kb on - strand, within HUW76_02170at 440.293 kb on + strand, within HUW76_02170at 440.293 kb on + strand, within HUW76_02170at 440.705 kb on - strandat 440.705 kb on - strandat 440.705 kb on - strandat 440.705 kb on - strandat 440.713 kb on - strandat 440.912 kb on + strandat 440.974 kb on + strand, within HUW76_02175at 440.974 kb on + strand, within HUW76_02175at 440.988 kb on + strand, within HUW76_02175at 440.988 kb on + strand, within HUW76_02175at 441.019 kb on - strand, within HUW76_02175at 441.055 kb on + strand, within HUW76_02175at 441.055 kb on + strand, within HUW76_02175at 441.104 kb on - strand, within HUW76_02175at 441.105 kb on - strand, within HUW76_02175at 441.105 kb on - strand, within HUW76_02175at 441.123 kb on + strand, within HUW76_02175at 441.123 kb on + strand, within HUW76_02175at 441.125 kb on + strand, within HUW76_02175at 441.145 kb on + strand, within HUW76_02175at 441.254 kb on - strand, within HUW76_02175at 441.293 kb on - strand, within HUW76_02175at 441.322 kb on - strand, within HUW76_02175at 441.322 kb on - strand, within HUW76_02175at 441.809 kb on - strand, within HUW76_02180at 441.809 kb on - strand, within HUW76_02180at 442.090 kb on - strandat 442.137 kb on + strand, within HUW76_02185at 442.194 kb on + strand, within HUW76_02185at 442.203 kb on - strand, within HUW76_02185at 442.219 kb on + strand, within HUW76_02185at 442.219 kb on + strand, within HUW76_02185at 442.219 kb on + strand, within HUW76_02185at 442.219 kb on + strand, within HUW76_02185at 442.219 kb on + strand, within HUW76_02185at 442.219 kb on + strand, within HUW76_02185at 442.222 kb on + strand, within HUW76_02185at 442.227 kb on - strand, within HUW76_02185at 442.229 kb on - strand, within HUW76_02185at 442.307 kb on + strand, within HUW76_02185at 442.307 kb on + strand, within HUW76_02185at 442.352 kb on + strand, within HUW76_02185at 442.352 kb on + strand, within HUW76_02185at 442.366 kb on + strand, within HUW76_02185at 442.366 kb on + strand, within HUW76_02185at 442.374 kb on - strand, within HUW76_02185at 442.387 kb on + strand, within HUW76_02185at 442.387 kb on + strand, within HUW76_02185at 442.570 kb on + strand, within HUW76_02185

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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439,910 + HUW76_02170 0.35 +0.9
439,910 + HUW76_02170 0.35 +1.7
439,910 + HUW76_02170 0.35 +0.9
439,955 + HUW76_02170 0.39 +1.0
439,955 + HUW76_02170 0.39 +2.0
439,955 + HUW76_02170 0.39 +2.2
440,028 + HUW76_02170 0.45 +0.3
440,062 + HUW76_02170 0.48 +0.9
440,062 + HUW76_02170 0.48 -0.0
440,070 - HUW76_02170 0.49 +1.4
440,088 + HUW76_02170 0.50 +0.4
440,088 + HUW76_02170 0.50 +1.2
440,132 + HUW76_02170 0.54 +1.0
440,132 + HUW76_02170 0.54 +1.6
440,132 + HUW76_02170 0.54 +0.5
440,132 + HUW76_02170 0.54 -1.7
440,132 + HUW76_02170 0.54 -0.1
440,156 - HUW76_02170 0.56 -0.2
440,221 + HUW76_02170 0.62 +2.3
440,223 + HUW76_02170 0.62 +0.7
440,223 + HUW76_02170 0.62 +0.6
440,231 - HUW76_02170 0.62 +2.6
440,231 - HUW76_02170 0.62 +1.8
440,238 + HUW76_02170 0.63 +0.4
440,238 + HUW76_02170 0.63 +0.9
440,241 - HUW76_02170 0.63 +0.6
440,293 + HUW76_02170 0.68 +0.8
440,293 + HUW76_02170 0.68 +1.1
440,705 - +1.9
440,705 - -1.3
440,705 - -1.0
440,705 - +0.9
440,713 - +0.3
440,912 + -0.2
440,974 + HUW76_02175 0.11 +0.3
440,974 + HUW76_02175 0.11 +0.0
440,988 + HUW76_02175 0.13 -0.4
440,988 + HUW76_02175 0.13 -0.5
441,019 - HUW76_02175 0.17 +0.6
441,055 + HUW76_02175 0.22 -0.6
441,055 + HUW76_02175 0.22 +0.0
441,104 - HUW76_02175 0.29 +1.1
441,105 - HUW76_02175 0.29 +0.3
441,105 - HUW76_02175 0.29 +0.6
441,123 + HUW76_02175 0.31 +0.2
441,123 + HUW76_02175 0.31 -0.3
441,125 + HUW76_02175 0.32 -0.1
441,145 + HUW76_02175 0.34 -0.1
441,254 - HUW76_02175 0.50 -0.2
441,293 - HUW76_02175 0.55 +0.1
441,322 - HUW76_02175 0.59 +1.1
441,322 - HUW76_02175 0.59 +0.6
441,809 - HUW76_02180 0.15 -0.1
441,809 - HUW76_02180 0.15 +0.5
442,090 - +1.2
442,137 + HUW76_02185 0.15 -0.7
442,194 + HUW76_02185 0.24 -0.4
442,203 - HUW76_02185 0.25 +1.0
442,219 + HUW76_02185 0.27 -0.0
442,219 + HUW76_02185 0.27 +0.2
442,219 + HUW76_02185 0.27 -0.5
442,219 + HUW76_02185 0.27 -0.3
442,219 + HUW76_02185 0.27 -0.6
442,219 + HUW76_02185 0.27 -0.9
442,222 + HUW76_02185 0.28 -0.5
442,227 - HUW76_02185 0.29 -0.4
442,229 - HUW76_02185 0.29 +0.8
442,307 + HUW76_02185 0.40 -0.5
442,307 + HUW76_02185 0.40 +1.2
442,352 + HUW76_02185 0.47 +0.5
442,352 + HUW76_02185 0.47 +0.6
442,366 + HUW76_02185 0.49 -0.1
442,366 + HUW76_02185 0.49 -0.0
442,374 - HUW76_02185 0.50 +1.0
442,387 + HUW76_02185 0.52 +0.3
442,387 + HUW76_02185 0.52 -0.6
442,570 + HUW76_02185 0.80 +0.3

Or see this region's nucleotide sequence