Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02085

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02075 and HUW76_02080 are separated by 10 nucleotidesHUW76_02080 and HUW76_02085 are separated by 5 nucleotidesHUW76_02085 and HUW76_02090 are separated by 16 nucleotides HUW76_02075: HUW76_02075 - MotA/TolQ/ExbB proton channel family protein, at 411,782 to 412,393 _02075 HUW76_02080: HUW76_02080 - biopolymer transporter ExbD, at 412,404 to 412,847 _02080 HUW76_02085: HUW76_02085 - energy transducer TonB, at 412,853 to 413,683 _02085 HUW76_02090: HUW76_02090 - sigma-54-dependent Fis family transcriptional regulator, at 413,700 to 415,094 _02090 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2 3at 412.150 kb on + strand, within HUW76_02075at 412.159 kb on + strand, within HUW76_02075at 412.159 kb on + strand, within HUW76_02075at 412.240 kb on + strand, within HUW76_02075at 412.253 kb on + strand, within HUW76_02075at 412.253 kb on + strand, within HUW76_02075at 412.256 kb on + strand, within HUW76_02075at 412.258 kb on + strand, within HUW76_02075at 412.258 kb on + strand, within HUW76_02075at 412.258 kb on + strand, within HUW76_02075at 412.263 kb on + strand, within HUW76_02075at 412.263 kb on + strand, within HUW76_02075at 412.286 kb on + strand, within HUW76_02075at 412.286 kb on + strand, within HUW76_02075at 412.380 kb on + strandat 412.380 kb on + strandat 412.380 kb on + strandat 412.380 kb on + strandat 412.388 kb on + strandat 412.388 kb on + strandat 412.388 kb on + strandat 412.388 kb on + strandat 412.432 kb on + strandat 412.440 kb on + strandat 412.440 kb on + strandat 412.513 kb on + strand, within HUW76_02080at 412.513 kb on + strand, within HUW76_02080at 412.532 kb on + strand, within HUW76_02080at 412.638 kb on + strand, within HUW76_02080at 412.779 kb on + strand, within HUW76_02080at 412.905 kb on + strandat 412.905 kb on + strandat 412.937 kb on + strand, within HUW76_02085at 412.937 kb on + strand, within HUW76_02085at 412.960 kb on + strand, within HUW76_02085at 412.960 kb on + strand, within HUW76_02085at 412.982 kb on + strand, within HUW76_02085at 413.003 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.005 kb on + strand, within HUW76_02085at 413.129 kb on + strand, within HUW76_02085at 413.212 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.281 kb on + strand, within HUW76_02085at 413.336 kb on + strand, within HUW76_02085at 413.336 kb on + strand, within HUW76_02085at 413.356 kb on + strand, within HUW76_02085at 413.358 kb on + strand, within HUW76_02085at 413.358 kb on + strand, within HUW76_02085at 413.414 kb on + strand, within HUW76_02085at 413.414 kb on + strand, within HUW76_02085at 413.435 kb on + strand, within HUW76_02085at 413.435 kb on + strand, within HUW76_02085at 413.447 kb on + strand, within HUW76_02085at 413.485 kb on + strand, within HUW76_02085at 413.531 kb on + strand, within HUW76_02085at 413.594 kb on + strand, within HUW76_02085at 413.604 kb on + strandat 413.612 kb on + strandat 413.766 kb on + strandat 413.766 kb on + strandat 413.827 kb on + strandat 413.928 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.005 kb on + strand, within HUW76_02090at 414.015 kb on + strand, within HUW76_02090at 414.015 kb on + strand, within HUW76_02090at 414.055 kb on + strand, within HUW76_02090at 414.109 kb on + strand, within HUW76_02090at 414.160 kb on + strand, within HUW76_02090at 414.190 kb on + strand, within HUW76_02090at 414.220 kb on + strand, within HUW76_02090at 414.220 kb on + strand, within HUW76_02090at 414.220 kb on + strand, within HUW76_02090at 414.230 kb on + strand, within HUW76_02090at 414.230 kb on + strand, within HUW76_02090at 414.240 kb on + strand, within HUW76_02090at 414.240 kb on + strand, within HUW76_02090at 414.347 kb on + strand, within HUW76_02090at 414.347 kb on + strand, within HUW76_02090at 414.512 kb on + strand, within HUW76_02090

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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412,150 + HUW76_02075 0.60 -0.6
412,159 + HUW76_02075 0.62 -0.7
412,159 + HUW76_02075 0.62 -1.1
412,240 + HUW76_02075 0.75 -0.5
412,253 + HUW76_02075 0.77 +0.0
412,253 + HUW76_02075 0.77 -0.2
412,256 + HUW76_02075 0.77 -0.1
412,258 + HUW76_02075 0.78 +0.3
412,258 + HUW76_02075 0.78 -0.3
412,258 + HUW76_02075 0.78 -0.4
412,263 + HUW76_02075 0.79 -2.0
412,263 + HUW76_02075 0.79 -0.7
412,286 + HUW76_02075 0.82 -1.1
412,286 + HUW76_02075 0.82 +0.5
412,380 + +0.3
412,380 + -0.6
412,380 + -0.2
412,380 + +0.2
412,388 + -0.7
412,388 + -0.1
412,388 + -0.3
412,388 + +0.1
412,432 + -0.2
412,440 + -0.4
412,440 + -0.3
412,513 + HUW76_02080 0.25 -0.6
412,513 + HUW76_02080 0.25 -0.8
412,532 + HUW76_02080 0.29 +0.4
412,638 + HUW76_02080 0.53 -0.5
412,779 + HUW76_02080 0.84 -0.4
412,905 + -1.2
412,905 + -0.3
412,937 + HUW76_02085 0.10 -0.1
412,937 + HUW76_02085 0.10 -0.7
412,960 + HUW76_02085 0.13 -0.8
412,960 + HUW76_02085 0.13 +0.4
412,982 + HUW76_02085 0.16 +0.3
413,003 + HUW76_02085 0.18 -0.2
413,005 + HUW76_02085 0.18 -0.5
413,005 + HUW76_02085 0.18 +0.1
413,005 + HUW76_02085 0.18 -0.1
413,005 + HUW76_02085 0.18 -0.7
413,129 + HUW76_02085 0.33 -0.9
413,212 + HUW76_02085 0.43 -0.4
413,281 + HUW76_02085 0.52 -0.0
413,281 + HUW76_02085 0.52 +0.0
413,281 + HUW76_02085 0.52 -0.2
413,281 + HUW76_02085 0.52 -0.3
413,281 + HUW76_02085 0.52 -0.8
413,281 + HUW76_02085 0.52 -0.5
413,281 + HUW76_02085 0.52 -0.5
413,336 + HUW76_02085 0.58 -0.5
413,336 + HUW76_02085 0.58 -0.5
413,356 + HUW76_02085 0.61 -0.2
413,358 + HUW76_02085 0.61 -0.9
413,358 + HUW76_02085 0.61 -0.9
413,414 + HUW76_02085 0.68 -0.2
413,414 + HUW76_02085 0.68 +0.4
413,435 + HUW76_02085 0.70 +0.3
413,435 + HUW76_02085 0.70 +0.4
413,447 + HUW76_02085 0.71 -0.7
413,485 + HUW76_02085 0.76 -0.5
413,531 + HUW76_02085 0.82 -1.0
413,594 + HUW76_02085 0.89 -0.7
413,604 + -0.4
413,612 + -0.4
413,766 + -0.3
413,766 + +1.0
413,827 + +0.9
413,928 + HUW76_02090 0.16 -0.3
414,005 + HUW76_02090 0.22 +3.0
414,005 + HUW76_02090 0.22 +0.6
414,005 + HUW76_02090 0.22 +1.1
414,005 + HUW76_02090 0.22 +0.9
414,005 + HUW76_02090 0.22 +0.3
414,005 + HUW76_02090 0.22 -0.2
414,015 + HUW76_02090 0.23 +1.1
414,015 + HUW76_02090 0.23 -0.4
414,055 + HUW76_02090 0.25 +0.3
414,109 + HUW76_02090 0.29 -0.8
414,160 + HUW76_02090 0.33 +0.6
414,190 + HUW76_02090 0.35 -0.0
414,220 + HUW76_02090 0.37 +0.9
414,220 + HUW76_02090 0.37 -1.0
414,220 + HUW76_02090 0.37 +0.4
414,230 + HUW76_02090 0.38 +0.7
414,230 + HUW76_02090 0.38 -1.2
414,240 + HUW76_02090 0.39 -0.2
414,240 + HUW76_02090 0.39 +1.3
414,347 + HUW76_02090 0.46 +0.4
414,347 + HUW76_02090 0.46 +2.7
414,512 + HUW76_02090 0.58 +1.2

Or see this region's nucleotide sequence