Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_00080 and HUW76_00085 are separated by 235 nucleotides HUW76_00085 and HUW76_00090 overlap by 1 nucleotides
HUW76_00080: HUW76_00080 - UDP-glucose--hexose-1-phosphate uridylyltransferase, at 16,628 to 18,157
_00080
HUW76_00085: HUW76_00085 - transposase, at 18,393 to 18,764
_00085
HUW76_00090: HUW76_00090 - galactokinase, at 18,764 to 19,936
_00090
Position (kb) 18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.473 kb on + strand, within HUW76_00080 at 17.473 kb on + strand, within HUW76_00080 at 17.473 kb on + strand, within HUW76_00080 at 17.473 kb on + strand, within HUW76_00080 at 17.481 kb on - strand, within HUW76_00080 at 17.481 kb on - strand, within HUW76_00080 at 17.491 kb on - strand, within HUW76_00080 at 17.491 kb on - strand, within HUW76_00080 at 17.568 kb on - strand, within HUW76_00080 at 17.568 kb on - strand, within HUW76_00080 at 17.592 kb on + strand, within HUW76_00080 at 17.592 kb on + strand, within HUW76_00080 at 17.598 kb on - strand, within HUW76_00080 at 17.737 kb on + strand, within HUW76_00080 at 17.737 kb on + strand, within HUW76_00080 at 17.737 kb on + strand, within HUW76_00080 at 17.737 kb on + strand, within HUW76_00080 at 17.745 kb on - strand, within HUW76_00080 at 17.887 kb on - strand, within HUW76_00080 at 17.935 kb on + strand, within HUW76_00080 at 17.935 kb on - strand, within HUW76_00080 at 17.935 kb on - strand, within HUW76_00080 at 17.967 kb on - strand, within HUW76_00080 at 17.989 kb on - strand, within HUW76_00080 at 17.989 kb on - strand, within HUW76_00080 at 18.079 kb on + strand at 18.418 kb on + strand at 18.418 kb on + strand at 18.423 kb on + strand at 18.423 kb on + strand at 18.456 kb on - strand, within HUW76_00085 at 18.498 kb on + strand, within HUW76_00085 at 18.518 kb on + strand, within HUW76_00085 at 18.532 kb on + strand, within HUW76_00085 at 18.532 kb on + strand, within HUW76_00085 at 18.554 kb on + strand, within HUW76_00085 at 18.562 kb on - strand, within HUW76_00085 at 18.866 kb on + strand at 18.866 kb on + strand at 18.866 kb on + strand at 18.866 kb on + strand at 18.873 kb on + strand at 18.874 kb on - strand at 18.874 kb on - strand at 18.874 kb on - strand at 18.874 kb on - strand at 18.896 kb on - strand, within HUW76_00090 at 18.906 kb on - strand, within HUW76_00090 at 18.906 kb on - strand, within HUW76_00090 at 18.906 kb on - strand, within HUW76_00090 at 18.921 kb on + strand, within HUW76_00090 at 18.921 kb on + strand, within HUW76_00090 at 18.975 kb on - strand, within HUW76_00090 at 18.975 kb on - strand, within HUW76_00090 at 18.985 kb on - strand, within HUW76_00090 at 18.997 kb on + strand, within HUW76_00090 at 19.001 kb on + strand, within HUW76_00090 at 19.009 kb on + strand, within HUW76_00090 at 19.179 kb on + strand, within HUW76_00090 at 19.285 kb on - strand, within HUW76_00090 at 19.285 kb on - strand, within HUW76_00090 at 19.320 kb on - strand, within HUW76_00090 at 19.466 kb on + strand, within HUW76_00090 at 19.466 kb on + strand, within HUW76_00090 at 19.466 kb on + strand, within HUW76_00090 at 19.466 kb on + strand, within HUW76_00090 at 19.466 kb on + strand, within HUW76_00090 at 19.466 kb on + strand, within HUW76_00090 at 19.467 kb on + strand, within HUW76_00090 at 19.467 kb on + strand, within HUW76_00090 at 19.474 kb on - strand, within HUW76_00090 at 19.514 kb on + strand, within HUW76_00090 at 19.514 kb on + strand, within HUW76_00090 at 19.516 kb on + strand, within HUW76_00090 at 19.524 kb on - strand, within HUW76_00090 at 19.524 kb on - strand, within HUW76_00090 at 19.524 kb on - strand, within HUW76_00090 at 19.524 kb on - strand, within HUW76_00090 at 19.524 kb on - strand, within HUW76_00090 at 19.558 kb on + strand, within HUW76_00090 at 19.566 kb on - strand, within HUW76_00090 at 19.566 kb on - strand, within HUW76_00090 at 19.602 kb on - strand, within HUW76_00090 at 19.656 kb on - strand, within HUW76_00090
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 17,473 + HUW76_00080 0.55 +0.3 17,473 + HUW76_00080 0.55 +0.2 17,473 + HUW76_00080 0.55 +1.1 17,473 + HUW76_00080 0.55 +0.8 17,481 - HUW76_00080 0.56 +0.1 17,481 - HUW76_00080 0.56 +0.8 17,491 - HUW76_00080 0.56 +0.4 17,491 - HUW76_00080 0.56 -0.5 17,568 - HUW76_00080 0.61 -0.4 17,568 - HUW76_00080 0.61 -0.6 17,592 + HUW76_00080 0.63 +0.6 17,592 + HUW76_00080 0.63 +1.4 17,598 - HUW76_00080 0.63 -0.6 17,737 + HUW76_00080 0.72 -0.6 17,737 + HUW76_00080 0.72 -0.6 17,737 + HUW76_00080 0.72 +0.4 17,737 + HUW76_00080 0.72 +0.7 17,745 - HUW76_00080 0.73 -0.5 17,887 - HUW76_00080 0.82 -0.2 17,935 + HUW76_00080 0.85 +0.9 17,935 - HUW76_00080 0.85 -0.7 17,935 - HUW76_00080 0.85 -1.4 17,967 - HUW76_00080 0.88 -0.3 17,989 - HUW76_00080 0.89 -0.1 17,989 - HUW76_00080 0.89 -1.4 18,079 + -0.6 18,418 + -0.0 18,418 + +0.0 18,423 + +0.4 18,423 + +0.9 18,456 - HUW76_00085 0.17 -0.2 18,498 + HUW76_00085 0.28 +0.3 18,518 + HUW76_00085 0.34 -0.1 18,532 + HUW76_00085 0.37 -0.0 18,532 + HUW76_00085 0.37 +0.1 18,554 + HUW76_00085 0.43 -0.5 18,562 - HUW76_00085 0.45 -0.5 18,866 + +0.3 18,866 + -0.2 18,866 + +0.2 18,866 + +0.5 18,873 + -0.4 18,874 - -0.2 18,874 - -0.3 18,874 - +0.1 18,874 - +0.2 18,896 - HUW76_00090 0.11 -0.7 18,906 - HUW76_00090 0.12 +0.5 18,906 - HUW76_00090 0.12 +1.2 18,906 - HUW76_00090 0.12 -0.1 18,921 + HUW76_00090 0.13 -2.6 18,921 + HUW76_00090 0.13 +1.0 18,975 - HUW76_00090 0.18 +0.3 18,975 - HUW76_00090 0.18 -0.5 18,985 - HUW76_00090 0.19 +0.0 18,997 + HUW76_00090 0.20 +0.9 19,001 + HUW76_00090 0.20 +0.5 19,009 + HUW76_00090 0.21 +0.1 19,179 + HUW76_00090 0.35 +3.6 19,285 - HUW76_00090 0.44 -0.1 19,285 - HUW76_00090 0.44 -0.4 19,320 - HUW76_00090 0.47 -0.2 19,466 + HUW76_00090 0.60 +0.2 19,466 + HUW76_00090 0.60 -0.3 19,466 + HUW76_00090 0.60 -1.7 19,466 + HUW76_00090 0.60 +0.5 19,466 + HUW76_00090 0.60 +1.4 19,466 + HUW76_00090 0.60 -0.3 19,467 + HUW76_00090 0.60 +0.8 19,467 + HUW76_00090 0.60 +0.6 19,474 - HUW76_00090 0.61 +0.3 19,514 + HUW76_00090 0.64 +0.7 19,514 + HUW76_00090 0.64 -0.6 19,516 + HUW76_00090 0.64 -0.5 19,524 - HUW76_00090 0.65 +0.1 19,524 - HUW76_00090 0.65 -0.1 19,524 - HUW76_00090 0.65 +0.0 19,524 - HUW76_00090 0.65 -0.4 19,524 - HUW76_00090 0.65 -0.2 19,558 + HUW76_00090 0.68 +0.8 19,566 - HUW76_00090 0.68 +0.0 19,566 - HUW76_00090 0.68 +0.2 19,602 - HUW76_00090 0.71 -0.5 19,656 - HUW76_00090 0.76 -0.7
Or see this region's nucleotide sequence