Strain Fitness in Serratia liquefaciens MT49 around IAI46_25090

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25085 and IAI46_25090 are separated by 2 nucleotidesIAI46_25090 and IAI46_25095 are separated by 3 nucleotides IAI46_25085: IAI46_25085 - ATPase RavA, at 5,356,610 to 5,358,118 _25085 IAI46_25090: IAI46_25090 - ATPase RavA stimulator ViaA, at 5,358,121 to 5,359,584 _25090 IAI46_25095: IAI46_25095 - aspartate--ammonia ligase, at 5,359,588 to 5,360,580 _25095 Position (kb) 5358 5359 5360Strain fitness (log2 ratio) -1 0 1 2 3at 5357.127 kb on + strand, within IAI46_25085at 5357.127 kb on + strand, within IAI46_25085at 5357.127 kb on + strand, within IAI46_25085at 5357.128 kb on - strand, within IAI46_25085at 5357.128 kb on - strand, within IAI46_25085at 5357.128 kb on - strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.243 kb on + strand, within IAI46_25085at 5357.244 kb on - strand, within IAI46_25085at 5357.244 kb on - strand, within IAI46_25085at 5357.304 kb on + strand, within IAI46_25085at 5357.348 kb on + strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.349 kb on - strand, within IAI46_25085at 5357.407 kb on - strand, within IAI46_25085at 5357.482 kb on - strand, within IAI46_25085at 5357.482 kb on - strand, within IAI46_25085at 5357.482 kb on - strand, within IAI46_25085at 5357.502 kb on + strand, within IAI46_25085at 5357.503 kb on - strand, within IAI46_25085at 5357.528 kb on + strand, within IAI46_25085at 5357.528 kb on + strand, within IAI46_25085at 5357.529 kb on - strand, within IAI46_25085at 5357.529 kb on - strand, within IAI46_25085at 5357.731 kb on + strand, within IAI46_25085at 5357.752 kb on + strand, within IAI46_25085at 5357.753 kb on - strand, within IAI46_25085at 5357.799 kb on + strand, within IAI46_25085at 5357.800 kb on - strand, within IAI46_25085at 5357.918 kb on - strand, within IAI46_25085at 5357.919 kb on + strand, within IAI46_25085at 5357.919 kb on + strand, within IAI46_25085at 5357.919 kb on + strand, within IAI46_25085at 5357.920 kb on - strand, within IAI46_25085at 5357.920 kb on - strand, within IAI46_25085at 5358.025 kb on + strandat 5358.116 kb on + strandat 5358.117 kb on - strandat 5358.195 kb on + strandat 5358.195 kb on + strandat 5358.195 kb on + strandat 5358.343 kb on + strand, within IAI46_25090at 5358.344 kb on - strand, within IAI46_25090at 5358.365 kb on + strand, within IAI46_25090at 5358.365 kb on + strand, within IAI46_25090at 5358.366 kb on - strand, within IAI46_25090at 5358.376 kb on - strand, within IAI46_25090at 5358.390 kb on + strand, within IAI46_25090at 5358.391 kb on - strand, within IAI46_25090at 5358.391 kb on - strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.439 kb on + strand, within IAI46_25090at 5358.518 kb on + strand, within IAI46_25090at 5358.519 kb on - strand, within IAI46_25090at 5358.519 kb on - strand, within IAI46_25090at 5358.799 kb on + strand, within IAI46_25090at 5358.799 kb on + strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.800 kb on - strand, within IAI46_25090at 5358.894 kb on + strand, within IAI46_25090at 5359.044 kb on - strand, within IAI46_25090at 5359.044 kb on - strand, within IAI46_25090at 5359.207 kb on + strand, within IAI46_25090at 5359.207 kb on + strand, within IAI46_25090at 5359.207 kb on + strand, within IAI46_25090at 5359.207 kb on + strand, within IAI46_25090at 5359.207 kb on + strand, within IAI46_25090at 5359.207 kb on + strand, within IAI46_25090at 5359.208 kb on - strand, within IAI46_25090at 5359.208 kb on - strand, within IAI46_25090at 5359.232 kb on + strand, within IAI46_25090at 5359.232 kb on + strand, within IAI46_25090at 5359.232 kb on + strand, within IAI46_25090at 5359.233 kb on - strand, within IAI46_25090at 5359.240 kb on + strand, within IAI46_25090at 5359.241 kb on - strand, within IAI46_25090at 5359.241 kb on - strand, within IAI46_25090at 5359.249 kb on - strand, within IAI46_25090at 5359.398 kb on + strand, within IAI46_25090at 5359.399 kb on - strand, within IAI46_25090at 5359.427 kb on + strand, within IAI46_25090at 5359.427 kb on + strand, within IAI46_25090at 5359.427 kb on + strand, within IAI46_25090at 5359.428 kb on - strand, within IAI46_25090at 5359.492 kb on + strandat 5359.493 kb on - strandat 5359.493 kb on - strandat 5359.527 kb on + strandat 5359.527 kb on + strandat 5359.528 kb on - strandat 5359.528 kb on - strandat 5359.710 kb on + strand, within IAI46_25095at 5359.710 kb on + strand, within IAI46_25095at 5359.710 kb on + strand, within IAI46_25095at 5359.722 kb on + strand, within IAI46_25095at 5359.723 kb on - strand, within IAI46_25095at 5359.827 kb on + strand, within IAI46_25095at 5359.875 kb on + strand, within IAI46_25095at 5359.876 kb on - strand, within IAI46_25095at 5359.928 kb on + strand, within IAI46_25095at 5359.928 kb on + strand, within IAI46_25095at 5359.929 kb on - strand, within IAI46_25095at 5359.929 kb on - strand, within IAI46_25095at 5359.972 kb on - strand, within IAI46_25095at 5359.972 kb on - strand, within IAI46_25095at 5359.994 kb on - strand, within IAI46_25095at 5360.149 kb on - strand, within IAI46_25095at 5360.159 kb on + strand, within IAI46_25095at 5360.160 kb on - strand, within IAI46_25095at 5360.163 kb on + strand, within IAI46_25095at 5360.163 kb on + strand, within IAI46_25095at 5360.163 kb on + strand, within IAI46_25095at 5360.164 kb on - strand, within IAI46_25095at 5360.164 kb on - strand, within IAI46_25095at 5360.164 kb on - strand, within IAI46_25095at 5360.164 kb on - strand, within IAI46_25095at 5360.243 kb on + strand, within IAI46_25095at 5360.244 kb on - strand, within IAI46_25095at 5360.244 kb on - strand, within IAI46_25095at 5360.295 kb on + strand, within IAI46_25095at 5360.295 kb on + strand, within IAI46_25095at 5360.302 kb on - strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.303 kb on + strand, within IAI46_25095at 5360.304 kb on - strand, within IAI46_25095at 5360.304 kb on - strand, within IAI46_25095at 5360.304 kb on - strand, within IAI46_25095at 5360.304 kb on - strand, within IAI46_25095at 5360.346 kb on + strand, within IAI46_25095at 5360.347 kb on - strand, within IAI46_25095at 5360.347 kb on - strand, within IAI46_25095at 5360.410 kb on + strand, within IAI46_25095at 5360.410 kb on + strand, within IAI46_25095at 5360.410 kb on + strand, within IAI46_25095at 5360.411 kb on - strand, within IAI46_25095at 5360.430 kb on + strand, within IAI46_25095at 5360.430 kb on + strand, within IAI46_25095at 5360.430 kb on + strand, within IAI46_25095at 5360.443 kb on - strand, within IAI46_25095at 5360.535 kb on + strandat 5360.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,357,127 + IAI46_25085 0.34 -0.9
5,357,127 + IAI46_25085 0.34 -0.1
5,357,127 + IAI46_25085 0.34 -1.1
5,357,128 - IAI46_25085 0.34 +1.2
5,357,128 - IAI46_25085 0.34 +0.2
5,357,128 - IAI46_25085 0.34 -1.5
5,357,243 + IAI46_25085 0.42 -0.2
5,357,243 + IAI46_25085 0.42 +0.5
5,357,243 + IAI46_25085 0.42 -0.9
5,357,243 + IAI46_25085 0.42 +0.2
5,357,243 + IAI46_25085 0.42 -1.1
5,357,244 - IAI46_25085 0.42 -0.8
5,357,244 - IAI46_25085 0.42 -0.1
5,357,304 + IAI46_25085 0.46 +0.6
5,357,348 + IAI46_25085 0.49 -0.4
5,357,349 - IAI46_25085 0.49 -0.3
5,357,349 - IAI46_25085 0.49 +0.2
5,357,349 - IAI46_25085 0.49 +2.0
5,357,349 - IAI46_25085 0.49 +2.8
5,357,349 - IAI46_25085 0.49 +0.5
5,357,407 - IAI46_25085 0.53 +0.6
5,357,482 - IAI46_25085 0.58 +1.6
5,357,482 - IAI46_25085 0.58 -0.7
5,357,482 - IAI46_25085 0.58 +0.1
5,357,502 + IAI46_25085 0.59 +0.1
5,357,503 - IAI46_25085 0.59 +0.3
5,357,528 + IAI46_25085 0.61 -0.6
5,357,528 + IAI46_25085 0.61 +0.1
5,357,529 - IAI46_25085 0.61 -0.3
5,357,529 - IAI46_25085 0.61 -0.2
5,357,731 + IAI46_25085 0.74 -1.2
5,357,752 + IAI46_25085 0.76 +0.9
5,357,753 - IAI46_25085 0.76 +0.0
5,357,799 + IAI46_25085 0.79 -0.3
5,357,800 - IAI46_25085 0.79 -0.3
5,357,918 - IAI46_25085 0.87 -0.5
5,357,919 + IAI46_25085 0.87 -0.3
5,357,919 + IAI46_25085 0.87 -0.7
5,357,919 + IAI46_25085 0.87 +0.3
5,357,920 - IAI46_25085 0.87 +0.4
5,357,920 - IAI46_25085 0.87 +0.5
5,358,025 + +0.5
5,358,116 + +0.4
5,358,117 - +0.2
5,358,195 + -0.7
5,358,195 + +0.7
5,358,195 + -0.6
5,358,343 + IAI46_25090 0.15 -0.1
5,358,344 - IAI46_25090 0.15 +1.8
5,358,365 + IAI46_25090 0.17 +0.6
5,358,365 + IAI46_25090 0.17 +0.3
5,358,366 - IAI46_25090 0.17 -0.1
5,358,376 - IAI46_25090 0.17 +0.3
5,358,390 + IAI46_25090 0.18 -0.2
5,358,391 - IAI46_25090 0.18 +0.2
5,358,391 - IAI46_25090 0.18 -1.7
5,358,439 + IAI46_25090 0.22 +0.0
5,358,439 + IAI46_25090 0.22 +0.4
5,358,439 + IAI46_25090 0.22 +1.7
5,358,439 + IAI46_25090 0.22 +0.6
5,358,439 + IAI46_25090 0.22 +0.7
5,358,439 + IAI46_25090 0.22 -0.6
5,358,518 + IAI46_25090 0.27 -0.0
5,358,519 - IAI46_25090 0.27 -0.3
5,358,519 - IAI46_25090 0.27 -0.0
5,358,799 + IAI46_25090 0.46 +0.4
5,358,799 + IAI46_25090 0.46 -0.3
5,358,800 - IAI46_25090 0.46 +1.1
5,358,800 - IAI46_25090 0.46 -0.5
5,358,800 - IAI46_25090 0.46 +0.2
5,358,800 - IAI46_25090 0.46 -0.7
5,358,894 + IAI46_25090 0.53 +0.7
5,359,044 - IAI46_25090 0.63 +1.1
5,359,044 - IAI46_25090 0.63 +0.5
5,359,207 + IAI46_25090 0.74 +0.6
5,359,207 + IAI46_25090 0.74 +0.8
5,359,207 + IAI46_25090 0.74 +0.5
5,359,207 + IAI46_25090 0.74 -0.3
5,359,207 + IAI46_25090 0.74 -0.4
5,359,207 + IAI46_25090 0.74 +0.7
5,359,208 - IAI46_25090 0.74 +1.2
5,359,208 - IAI46_25090 0.74 +0.1
5,359,232 + IAI46_25090 0.76 +0.6
5,359,232 + IAI46_25090 0.76 +0.4
5,359,232 + IAI46_25090 0.76 +0.4
5,359,233 - IAI46_25090 0.76 -0.3
5,359,240 + IAI46_25090 0.76 +0.3
5,359,241 - IAI46_25090 0.77 +1.5
5,359,241 - IAI46_25090 0.77 -0.7
5,359,249 - IAI46_25090 0.77 +0.1
5,359,398 + IAI46_25090 0.87 +1.0
5,359,399 - IAI46_25090 0.87 +0.4
5,359,427 + IAI46_25090 0.89 -0.4
5,359,427 + IAI46_25090 0.89 +0.0
5,359,427 + IAI46_25090 0.89 +0.3
5,359,428 - IAI46_25090 0.89 +0.2
5,359,492 + +0.8
5,359,493 - +0.5
5,359,493 - +1.8
5,359,527 + +0.4
5,359,527 + -0.7
5,359,528 - -0.8
5,359,528 - +1.0
5,359,710 + IAI46_25095 0.12 -0.1
5,359,710 + IAI46_25095 0.12 +0.4
5,359,710 + IAI46_25095 0.12 +0.2
5,359,722 + IAI46_25095 0.13 -0.4
5,359,723 - IAI46_25095 0.14 +0.4
5,359,827 + IAI46_25095 0.24 -0.7
5,359,875 + IAI46_25095 0.29 -0.2
5,359,876 - IAI46_25095 0.29 +0.2
5,359,928 + IAI46_25095 0.34 -0.5
5,359,928 + IAI46_25095 0.34 -0.6
5,359,929 - IAI46_25095 0.34 +1.1
5,359,929 - IAI46_25095 0.34 +0.3
5,359,972 - IAI46_25095 0.39 -0.2
5,359,972 - IAI46_25095 0.39 +0.3
5,359,994 - IAI46_25095 0.41 +0.2
5,360,149 - IAI46_25095 0.56 -1.2
5,360,159 + IAI46_25095 0.58 +0.6
5,360,160 - IAI46_25095 0.58 +0.3
5,360,163 + IAI46_25095 0.58 -0.3
5,360,163 + IAI46_25095 0.58 -0.3
5,360,163 + IAI46_25095 0.58 -0.3
5,360,164 - IAI46_25095 0.58 +0.3
5,360,164 - IAI46_25095 0.58 +0.1
5,360,164 - IAI46_25095 0.58 -0.1
5,360,164 - IAI46_25095 0.58 +0.2
5,360,243 + IAI46_25095 0.66 -0.6
5,360,244 - IAI46_25095 0.66 -0.9
5,360,244 - IAI46_25095 0.66 -1.7
5,360,295 + IAI46_25095 0.71 -0.2
5,360,295 + IAI46_25095 0.71 +0.0
5,360,302 - IAI46_25095 0.72 +0.7
5,360,303 + IAI46_25095 0.72 -0.3
5,360,303 + IAI46_25095 0.72 -0.4
5,360,303 + IAI46_25095 0.72 +0.6
5,360,303 + IAI46_25095 0.72 +0.0
5,360,303 + IAI46_25095 0.72 +0.2
5,360,303 + IAI46_25095 0.72 -0.4
5,360,303 + IAI46_25095 0.72 -0.1
5,360,304 - IAI46_25095 0.72 +0.0
5,360,304 - IAI46_25095 0.72 +0.4
5,360,304 - IAI46_25095 0.72 +0.3
5,360,304 - IAI46_25095 0.72 +0.1
5,360,346 + IAI46_25095 0.76 +0.5
5,360,347 - IAI46_25095 0.76 +1.4
5,360,347 - IAI46_25095 0.76 -0.5
5,360,410 + IAI46_25095 0.83 -0.4
5,360,410 + IAI46_25095 0.83 -0.1
5,360,410 + IAI46_25095 0.83 -0.3
5,360,411 - IAI46_25095 0.83 +0.5
5,360,430 + IAI46_25095 0.85 +0.4
5,360,430 + IAI46_25095 0.85 +0.8
5,360,430 + IAI46_25095 0.85 -0.5
5,360,443 - IAI46_25095 0.86 -0.3
5,360,535 + +0.0
5,360,566 - +0.8

Or see this region's nucleotide sequence