Strain Fitness in Serratia liquefaciens MT49 around IAI46_25010

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25000 and IAI46_25005 are separated by 105 nucleotidesIAI46_25005 and IAI46_25010 are separated by 151 nucleotidesIAI46_25010 and IAI46_25015 overlap by 8 nucleotidesIAI46_25015 and IAI46_25020 are separated by 72 nucleotidesIAI46_25020 and IAI46_25025 are separated by 81 nucleotides IAI46_25000: IAI46_25000 - serine/threonine protein kinase, at 5,337,845 to 5,338,831 _25000 IAI46_25005: IAI46_25005 - YihD family protein, at 5,338,937 to 5,339,206 _25005 IAI46_25010: IAI46_25010 - molybdenum cofactor guanylyltransferase MobA, at 5,339,358 to 5,339,951 _25010 IAI46_25015: IAI46_25015 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 5,339,944 to 5,340,465 _25015 IAI46_25020: IAI46_25020 - 5S ribosomal RNA, at 5,340,538 to 5,340,653 _25020 IAI46_25025: IAI46_25025 - 23S ribosomal RNA, at 5,340,735 to 5,343,672 _25025 Position (kb) 5339 5340Strain fitness (log2 ratio) -2 -1 0 1 2at 5338.377 kb on + strand, within IAI46_25000at 5338.378 kb on - strand, within IAI46_25000at 5338.378 kb on - strand, within IAI46_25000at 5338.544 kb on - strand, within IAI46_25000at 5338.552 kb on + strand, within IAI46_25000at 5338.552 kb on + strand, within IAI46_25000at 5338.553 kb on - strand, within IAI46_25000at 5338.568 kb on + strand, within IAI46_25000at 5338.568 kb on + strand, within IAI46_25000at 5338.569 kb on - strand, within IAI46_25000at 5338.569 kb on - strand, within IAI46_25000at 5338.677 kb on + strand, within IAI46_25000at 5338.678 kb on - strand, within IAI46_25000at 5338.678 kb on - strand, within IAI46_25000at 5338.684 kb on + strand, within IAI46_25000at 5338.685 kb on - strand, within IAI46_25000at 5338.699 kb on + strand, within IAI46_25000at 5338.699 kb on + strand, within IAI46_25000at 5338.699 kb on + strand, within IAI46_25000at 5338.700 kb on - strand, within IAI46_25000at 5338.707 kb on + strand, within IAI46_25000at 5338.708 kb on - strand, within IAI46_25000at 5338.723 kb on - strand, within IAI46_25000at 5338.751 kb on + strandat 5338.784 kb on - strandat 5338.831 kb on + strandat 5338.831 kb on + strandat 5338.831 kb on + strandat 5338.832 kb on - strandat 5338.882 kb on + strandat 5338.885 kb on + strandat 5338.891 kb on + strandat 5338.892 kb on - strandat 5338.892 kb on - strandat 5338.892 kb on - strandat 5338.892 kb on - strandat 5338.938 kb on + strandat 5338.964 kb on + strand, within IAI46_25005at 5338.965 kb on - strand, within IAI46_25005at 5338.965 kb on - strand, within IAI46_25005at 5338.965 kb on - strand, within IAI46_25005at 5338.992 kb on + strand, within IAI46_25005at 5338.992 kb on + strand, within IAI46_25005at 5338.993 kb on - strand, within IAI46_25005at 5339.053 kb on - strand, within IAI46_25005at 5339.062 kb on + strand, within IAI46_25005at 5339.212 kb on + strandat 5339.213 kb on - strandat 5339.213 kb on - strandat 5339.222 kb on + strandat 5339.222 kb on + strandat 5339.222 kb on + strandat 5339.222 kb on + strandat 5339.231 kb on + strandat 5339.244 kb on + strandat 5339.245 kb on - strandat 5339.291 kb on - strandat 5339.291 kb on - strandat 5339.291 kb on - strandat 5339.291 kb on - strandat 5339.314 kb on + strandat 5339.320 kb on + strandat 5339.320 kb on + strandat 5339.320 kb on + strandat 5339.320 kb on + strandat 5339.321 kb on - strandat 5339.321 kb on - strandat 5339.334 kb on + strandat 5339.357 kb on + strandat 5339.357 kb on + strandat 5339.357 kb on + strandat 5339.358 kb on - strandat 5339.358 kb on - strandat 5339.358 kb on - strandat 5339.358 kb on - strandat 5339.382 kb on - strandat 5339.423 kb on + strand, within IAI46_25010at 5339.458 kb on - strand, within IAI46_25010at 5339.463 kb on + strand, within IAI46_25010at 5339.463 kb on + strand, within IAI46_25010at 5339.463 kb on + strand, within IAI46_25010at 5339.463 kb on + strand, within IAI46_25010at 5339.464 kb on - strand, within IAI46_25010at 5339.464 kb on - strand, within IAI46_25010at 5339.464 kb on - strand, within IAI46_25010at 5339.533 kb on - strand, within IAI46_25010at 5339.535 kb on - strand, within IAI46_25010at 5339.555 kb on - strand, within IAI46_25010at 5339.616 kb on + strand, within IAI46_25010at 5339.617 kb on - strand, within IAI46_25010at 5339.617 kb on - strand, within IAI46_25010at 5339.721 kb on + strand, within IAI46_25010at 5339.721 kb on + strand, within IAI46_25010at 5339.721 kb on + strand, within IAI46_25010at 5339.722 kb on - strand, within IAI46_25010at 5339.756 kb on - strand, within IAI46_25010at 5339.796 kb on + strand, within IAI46_25010at 5339.796 kb on + strand, within IAI46_25010at 5339.797 kb on - strand, within IAI46_25010at 5339.801 kb on - strand, within IAI46_25010at 5339.801 kb on - strand, within IAI46_25010at 5339.891 kb on + strand, within IAI46_25010at 5339.892 kb on - strandat 5339.892 kb on - strandat 5339.894 kb on + strandat 5339.894 kb on + strandat 5339.894 kb on + strandat 5339.894 kb on + strandat 5339.894 kb on + strandat 5339.895 kb on - strandat 5339.895 kb on - strandat 5339.895 kb on - strandat 5339.895 kb on - strandat 5339.895 kb on - strandat 5339.898 kb on - strandat 5339.949 kb on + strandat 5339.949 kb on + strandat 5339.950 kb on - strandat 5339.950 kb on - strandat 5339.969 kb on + strandat 5339.986 kb on + strandat 5339.987 kb on - strandat 5339.987 kb on - strandat 5340.036 kb on - strand, within IAI46_25015at 5340.072 kb on + strand, within IAI46_25015at 5340.072 kb on + strand, within IAI46_25015at 5340.072 kb on + strand, within IAI46_25015at 5340.073 kb on - strand, within IAI46_25015at 5340.073 kb on - strand, within IAI46_25015at 5340.073 kb on - strand, within IAI46_25015at 5340.115 kb on + strand, within IAI46_25015at 5340.115 kb on + strand, within IAI46_25015at 5340.115 kb on + strand, within IAI46_25015at 5340.115 kb on + strand, within IAI46_25015at 5340.116 kb on - strand, within IAI46_25015at 5340.163 kb on - strand, within IAI46_25015at 5340.177 kb on - strand, within IAI46_25015at 5340.177 kb on - strand, within IAI46_25015at 5340.238 kb on - strand, within IAI46_25015at 5340.260 kb on + strand, within IAI46_25015at 5340.260 kb on + strand, within IAI46_25015at 5340.261 kb on - strand, within IAI46_25015at 5340.337 kb on - strand, within IAI46_25015at 5340.337 kb on - strand, within IAI46_25015at 5340.337 kb on - strand, within IAI46_25015at 5340.337 kb on - strand, within IAI46_25015at 5340.337 kb on - strand, within IAI46_25015at 5340.408 kb on + strand, within IAI46_25015at 5340.464 kb on - strandat 5340.464 kb on - strandat 5340.464 kb on - strandat 5340.477 kb on - strandat 5340.481 kb on - strandat 5340.481 kb on - strandat 5340.481 kb on - strandat 5340.494 kb on - strandat 5340.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,338,377 + IAI46_25000 0.54 +0.1
5,338,378 - IAI46_25000 0.54 -0.4
5,338,378 - IAI46_25000 0.54 -1.4
5,338,544 - IAI46_25000 0.71 +0.1
5,338,552 + IAI46_25000 0.72 -0.4
5,338,552 + IAI46_25000 0.72 -0.4
5,338,553 - IAI46_25000 0.72 +0.7
5,338,568 + IAI46_25000 0.73 +0.2
5,338,568 + IAI46_25000 0.73 -0.8
5,338,569 - IAI46_25000 0.73 +1.3
5,338,569 - IAI46_25000 0.73 -1.4
5,338,677 + IAI46_25000 0.84 +0.5
5,338,678 - IAI46_25000 0.84 -0.5
5,338,678 - IAI46_25000 0.84 -1.3
5,338,684 + IAI46_25000 0.85 -0.3
5,338,685 - IAI46_25000 0.85 +0.5
5,338,699 + IAI46_25000 0.87 +0.5
5,338,699 + IAI46_25000 0.87 +1.1
5,338,699 + IAI46_25000 0.87 +0.5
5,338,700 - IAI46_25000 0.87 +0.8
5,338,707 + IAI46_25000 0.87 -0.5
5,338,708 - IAI46_25000 0.87 -0.3
5,338,723 - IAI46_25000 0.89 -0.9
5,338,751 + -0.8
5,338,784 - +0.6
5,338,831 + +0.0
5,338,831 + +0.2
5,338,831 + +1.4
5,338,832 - +0.5
5,338,882 + +0.4
5,338,885 + +1.2
5,338,891 + +0.2
5,338,892 - +0.1
5,338,892 - -0.6
5,338,892 - +0.6
5,338,892 - +0.2
5,338,938 + +1.8
5,338,964 + IAI46_25005 0.10 +1.0
5,338,965 - IAI46_25005 0.10 +0.3
5,338,965 - IAI46_25005 0.10 +0.4
5,338,965 - IAI46_25005 0.10 -0.2
5,338,992 + IAI46_25005 0.20 +0.2
5,338,992 + IAI46_25005 0.20 -0.4
5,338,993 - IAI46_25005 0.21 -0.1
5,339,053 - IAI46_25005 0.43 +0.2
5,339,062 + IAI46_25005 0.46 +0.0
5,339,212 + -0.4
5,339,213 - +1.2
5,339,213 - -0.0
5,339,222 + +0.3
5,339,222 + -0.2
5,339,222 + -1.0
5,339,222 + -0.2
5,339,231 + -1.0
5,339,244 + +1.2
5,339,245 - -0.3
5,339,291 - +0.4
5,339,291 - -0.2
5,339,291 - -0.3
5,339,291 - -1.4
5,339,314 + -0.4
5,339,320 + -0.2
5,339,320 + +0.5
5,339,320 + +0.5
5,339,320 + +0.8
5,339,321 - -0.8
5,339,321 - +0.5
5,339,334 + -0.4
5,339,357 + -0.7
5,339,357 + +0.8
5,339,357 + -0.9
5,339,358 - +0.0
5,339,358 - +1.8
5,339,358 - +0.6
5,339,358 - +0.3
5,339,382 - +0.4
5,339,423 + IAI46_25010 0.11 -0.0
5,339,458 - IAI46_25010 0.17 +0.4
5,339,463 + IAI46_25010 0.18 +0.1
5,339,463 + IAI46_25010 0.18 -2.2
5,339,463 + IAI46_25010 0.18 +0.1
5,339,463 + IAI46_25010 0.18 -1.2
5,339,464 - IAI46_25010 0.18 -0.3
5,339,464 - IAI46_25010 0.18 +0.2
5,339,464 - IAI46_25010 0.18 +0.9
5,339,533 - IAI46_25010 0.29 -1.2
5,339,535 - IAI46_25010 0.30 -0.2
5,339,555 - IAI46_25010 0.33 -0.4
5,339,616 + IAI46_25010 0.43 -0.6
5,339,617 - IAI46_25010 0.44 +0.9
5,339,617 - IAI46_25010 0.44 +0.4
5,339,721 + IAI46_25010 0.61 +0.5
5,339,721 + IAI46_25010 0.61 +1.8
5,339,721 + IAI46_25010 0.61 -0.3
5,339,722 - IAI46_25010 0.61 -0.2
5,339,756 - IAI46_25010 0.67 -0.1
5,339,796 + IAI46_25010 0.74 +0.6
5,339,796 + IAI46_25010 0.74 -0.3
5,339,797 - IAI46_25010 0.74 +0.0
5,339,801 - IAI46_25010 0.75 -1.9
5,339,801 - IAI46_25010 0.75 +1.2
5,339,891 + IAI46_25010 0.90 +0.9
5,339,892 - -0.4
5,339,892 - +0.5
5,339,894 + +0.4
5,339,894 + -0.2
5,339,894 + +0.3
5,339,894 + +0.1
5,339,894 + -0.7
5,339,895 - -0.1
5,339,895 - +0.9
5,339,895 - +0.1
5,339,895 - +0.5
5,339,895 - -1.4
5,339,898 - +0.8
5,339,949 + +0.6
5,339,949 + -1.0
5,339,950 - +0.1
5,339,950 - -1.4
5,339,969 + -1.3
5,339,986 + -0.4
5,339,987 - -0.3
5,339,987 - +0.7
5,340,036 - IAI46_25015 0.18 -0.2
5,340,072 + IAI46_25015 0.25 +0.5
5,340,072 + IAI46_25015 0.25 +0.9
5,340,072 + IAI46_25015 0.25 +0.4
5,340,073 - IAI46_25015 0.25 -1.4
5,340,073 - IAI46_25015 0.25 +0.3
5,340,073 - IAI46_25015 0.25 +1.4
5,340,115 + IAI46_25015 0.33 -0.1
5,340,115 + IAI46_25015 0.33 +0.3
5,340,115 + IAI46_25015 0.33 -0.8
5,340,115 + IAI46_25015 0.33 -0.2
5,340,116 - IAI46_25015 0.33 +1.5
5,340,163 - IAI46_25015 0.42 -1.9
5,340,177 - IAI46_25015 0.45 -0.4
5,340,177 - IAI46_25015 0.45 +1.1
5,340,238 - IAI46_25015 0.56 -0.9
5,340,260 + IAI46_25015 0.61 -0.4
5,340,260 + IAI46_25015 0.61 +0.7
5,340,261 - IAI46_25015 0.61 -1.1
5,340,337 - IAI46_25015 0.75 -0.0
5,340,337 - IAI46_25015 0.75 +0.1
5,340,337 - IAI46_25015 0.75 -0.1
5,340,337 - IAI46_25015 0.75 +1.0
5,340,337 - IAI46_25015 0.75 -0.4
5,340,408 + IAI46_25015 0.89 -0.3
5,340,464 - +0.3
5,340,464 - +0.5
5,340,464 - +0.2
5,340,477 - -1.3
5,340,481 - -0.1
5,340,481 - -0.1
5,340,481 - -0.0
5,340,494 - +0.9
5,340,494 - +0.2

Or see this region's nucleotide sequence