Strain Fitness in Serratia liquefaciens MT49 around IAI46_24620

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24610 and IAI46_24615 are separated by 296 nucleotidesIAI46_24615 and IAI46_24620 are separated by 3 nucleotidesIAI46_24620 and IAI46_24625 are separated by 16 nucleotidesIAI46_24625 and IAI46_24630 are separated by 199 nucleotides IAI46_24610: IAI46_24610 - multidrug efflux MFS transporter EmrD, at 5,256,284 to 5,257,468 _24610 IAI46_24615: IAI46_24615 - HTH domain-containing protein, at 5,257,765 to 5,258,388 _24615 IAI46_24620: IAI46_24620 - ferredoxin--NADP(+) reductase, at 5,258,392 to 5,259,138 _24620 IAI46_24625: IAI46_24625 - DUF805 domain-containing protein, at 5,259,155 to 5,259,580 _24625 IAI46_24630: IAI46_24630 - YiiQ family protein, at 5,259,780 to 5,260,370 _24630 Position (kb) 5258 5259 5260Strain fitness (log2 ratio) -2 -1 0 1 2at 5257.429 kb on + strandat 5257.469 kb on + strandat 5257.470 kb on - strandat 5257.486 kb on + strandat 5257.555 kb on + strandat 5257.555 kb on + strandat 5257.555 kb on + strandat 5257.556 kb on - strandat 5257.556 kb on - strandat 5257.556 kb on - strandat 5257.561 kb on - strandat 5257.597 kb on - strandat 5257.644 kb on - strandat 5257.650 kb on + strandat 5257.651 kb on - strandat 5257.651 kb on - strandat 5257.651 kb on - strandat 5257.738 kb on + strandat 5257.906 kb on + strand, within IAI46_24615at 5257.946 kb on - strand, within IAI46_24615at 5257.946 kb on - strand, within IAI46_24615at 5257.996 kb on - strand, within IAI46_24615at 5258.060 kb on + strand, within IAI46_24615at 5258.060 kb on + strand, within IAI46_24615at 5258.087 kb on - strand, within IAI46_24615at 5258.147 kb on + strand, within IAI46_24615at 5258.173 kb on + strand, within IAI46_24615at 5258.173 kb on + strand, within IAI46_24615at 5258.173 kb on + strand, within IAI46_24615at 5258.173 kb on + strand, within IAI46_24615at 5258.174 kb on - strand, within IAI46_24615at 5258.174 kb on - strand, within IAI46_24615at 5258.174 kb on - strand, within IAI46_24615at 5258.174 kb on - strand, within IAI46_24615at 5258.175 kb on + strand, within IAI46_24615at 5258.176 kb on - strand, within IAI46_24615at 5258.176 kb on - strand, within IAI46_24615at 5258.176 kb on - strand, within IAI46_24615at 5258.316 kb on + strand, within IAI46_24615at 5258.316 kb on + strand, within IAI46_24615at 5258.316 kb on + strand, within IAI46_24615at 5258.316 kb on + strand, within IAI46_24615at 5258.317 kb on - strand, within IAI46_24615at 5258.317 kb on - strand, within IAI46_24615at 5258.318 kb on + strand, within IAI46_24615at 5258.318 kb on + strand, within IAI46_24615at 5258.319 kb on - strand, within IAI46_24615at 5258.319 kb on - strand, within IAI46_24615at 5258.325 kb on + strand, within IAI46_24615at 5258.325 kb on + strand, within IAI46_24615at 5258.326 kb on - strandat 5258.338 kb on - strandat 5258.386 kb on + strandat 5258.386 kb on + strandat 5258.387 kb on - strandat 5258.391 kb on + strandat 5258.392 kb on - strandat 5258.418 kb on + strandat 5258.419 kb on - strandat 5258.457 kb on + strandat 5258.475 kb on - strand, within IAI46_24620at 5258.475 kb on - strand, within IAI46_24620at 5258.484 kb on + strand, within IAI46_24620at 5258.484 kb on + strand, within IAI46_24620at 5258.485 kb on - strand, within IAI46_24620at 5258.546 kb on - strand, within IAI46_24620at 5258.551 kb on + strand, within IAI46_24620at 5258.552 kb on - strand, within IAI46_24620at 5258.552 kb on - strand, within IAI46_24620at 5258.552 kb on - strand, within IAI46_24620at 5258.588 kb on - strand, within IAI46_24620at 5258.637 kb on - strand, within IAI46_24620at 5258.637 kb on - strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.752 kb on + strand, within IAI46_24620at 5258.753 kb on - strand, within IAI46_24620at 5258.753 kb on - strand, within IAI46_24620at 5258.753 kb on - strand, within IAI46_24620at 5258.843 kb on - strand, within IAI46_24620at 5258.875 kb on + strand, within IAI46_24620at 5258.875 kb on + strand, within IAI46_24620at 5258.875 kb on + strand, within IAI46_24620at 5258.875 kb on + strand, within IAI46_24620at 5258.876 kb on - strand, within IAI46_24620at 5258.985 kb on - strand, within IAI46_24620at 5259.114 kb on + strandat 5259.114 kb on + strandat 5259.114 kb on + strandat 5259.131 kb on - strandat 5259.136 kb on + strandat 5259.137 kb on - strandat 5259.137 kb on - strandat 5259.137 kb on - strandat 5259.144 kb on - strandat 5259.172 kb on + strandat 5259.371 kb on - strand, within IAI46_24625at 5259.371 kb on - strand, within IAI46_24625at 5259.371 kb on - strand, within IAI46_24625at 5259.430 kb on + strand, within IAI46_24625at 5259.463 kb on + strand, within IAI46_24625at 5259.464 kb on - strand, within IAI46_24625at 5259.464 kb on - strand, within IAI46_24625at 5259.500 kb on + strand, within IAI46_24625at 5259.572 kb on + strandat 5259.573 kb on - strandat 5259.573 kb on - strandat 5259.573 kb on - strandat 5259.573 kb on - strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.624 kb on + strandat 5259.625 kb on - strandat 5259.625 kb on - strandat 5259.629 kb on + strandat 5259.629 kb on + strandat 5259.630 kb on - strandat 5259.672 kb on + strandat 5259.672 kb on + strandat 5259.774 kb on + strandat 5259.774 kb on + strandat 5259.774 kb on + strandat 5259.774 kb on + strandat 5259.775 kb on - strandat 5259.775 kb on - strandat 5259.775 kb on - strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.776 kb on + strandat 5259.777 kb on - strandat 5259.777 kb on - strandat 5259.777 kb on - strandat 5259.777 kb on - strandat 5259.778 kb on - strandat 5259.882 kb on + strand, within IAI46_24630at 5259.883 kb on - strand, within IAI46_24630at 5259.939 kb on + strand, within IAI46_24630at 5259.941 kb on + strand, within IAI46_24630at 5259.983 kb on + strand, within IAI46_24630at 5260.036 kb on + strand, within IAI46_24630at 5260.036 kb on + strand, within IAI46_24630at 5260.037 kb on - strand, within IAI46_24630at 5260.103 kb on + strand, within IAI46_24630at 5260.104 kb on - strand, within IAI46_24630

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,257,429 + -0.2
5,257,469 + -0.3
5,257,470 - -0.2
5,257,486 + +1.1
5,257,555 + -0.3
5,257,555 + +0.1
5,257,555 + -2.0
5,257,556 - -0.2
5,257,556 - +0.9
5,257,556 - -0.9
5,257,561 - -0.1
5,257,597 - -0.8
5,257,644 - +0.3
5,257,650 + +0.8
5,257,651 - -0.3
5,257,651 - +0.7
5,257,651 - -0.5
5,257,738 + -0.1
5,257,906 + IAI46_24615 0.23 +0.1
5,257,946 - IAI46_24615 0.29 -0.9
5,257,946 - IAI46_24615 0.29 +0.3
5,257,996 - IAI46_24615 0.37 +0.4
5,258,060 + IAI46_24615 0.47 +1.0
5,258,060 + IAI46_24615 0.47 -0.6
5,258,087 - IAI46_24615 0.52 -0.1
5,258,147 + IAI46_24615 0.61 +0.9
5,258,173 + IAI46_24615 0.65 +0.2
5,258,173 + IAI46_24615 0.65 -0.4
5,258,173 + IAI46_24615 0.65 +0.6
5,258,173 + IAI46_24615 0.65 +0.1
5,258,174 - IAI46_24615 0.66 -0.1
5,258,174 - IAI46_24615 0.66 +0.5
5,258,174 - IAI46_24615 0.66 +0.3
5,258,174 - IAI46_24615 0.66 -0.2
5,258,175 + IAI46_24615 0.66 +0.6
5,258,176 - IAI46_24615 0.66 -0.6
5,258,176 - IAI46_24615 0.66 -0.2
5,258,176 - IAI46_24615 0.66 +0.7
5,258,316 + IAI46_24615 0.88 +0.2
5,258,316 + IAI46_24615 0.88 -0.0
5,258,316 + IAI46_24615 0.88 +0.5
5,258,316 + IAI46_24615 0.88 -0.7
5,258,317 - IAI46_24615 0.88 +0.7
5,258,317 - IAI46_24615 0.88 -2.0
5,258,318 + IAI46_24615 0.89 +1.1
5,258,318 + IAI46_24615 0.89 -1.6
5,258,319 - IAI46_24615 0.89 -0.0
5,258,319 - IAI46_24615 0.89 +0.4
5,258,325 + IAI46_24615 0.90 +0.3
5,258,325 + IAI46_24615 0.90 -0.4
5,258,326 - +0.9
5,258,338 - -0.6
5,258,386 + +0.7
5,258,386 + +0.7
5,258,387 - -0.6
5,258,391 + -0.6
5,258,392 - +0.8
5,258,418 + -0.0
5,258,419 - -0.1
5,258,457 + -0.3
5,258,475 - IAI46_24620 0.11 -0.5
5,258,475 - IAI46_24620 0.11 +0.7
5,258,484 + IAI46_24620 0.12 +0.0
5,258,484 + IAI46_24620 0.12 +0.0
5,258,485 - IAI46_24620 0.12 +0.1
5,258,546 - IAI46_24620 0.21 -0.2
5,258,551 + IAI46_24620 0.21 +0.1
5,258,552 - IAI46_24620 0.21 -0.3
5,258,552 - IAI46_24620 0.21 -0.4
5,258,552 - IAI46_24620 0.21 -0.6
5,258,588 - IAI46_24620 0.26 +0.8
5,258,637 - IAI46_24620 0.33 -0.5
5,258,637 - IAI46_24620 0.33 +0.7
5,258,752 + IAI46_24620 0.48 +0.2
5,258,752 + IAI46_24620 0.48 -0.1
5,258,752 + IAI46_24620 0.48 +2.4
5,258,752 + IAI46_24620 0.48 +0.1
5,258,752 + IAI46_24620 0.48 -1.4
5,258,752 + IAI46_24620 0.48 -0.6
5,258,752 + IAI46_24620 0.48 -0.5
5,258,753 - IAI46_24620 0.48 -1.0
5,258,753 - IAI46_24620 0.48 -0.7
5,258,753 - IAI46_24620 0.48 +1.1
5,258,843 - IAI46_24620 0.60 +0.1
5,258,875 + IAI46_24620 0.65 -1.0
5,258,875 + IAI46_24620 0.65 +0.4
5,258,875 + IAI46_24620 0.65 +0.0
5,258,875 + IAI46_24620 0.65 -0.9
5,258,876 - IAI46_24620 0.65 +0.8
5,258,985 - IAI46_24620 0.79 -0.1
5,259,114 + +0.5
5,259,114 + +1.0
5,259,114 + +0.5
5,259,131 - +0.5
5,259,136 + +1.0
5,259,137 - -0.3
5,259,137 - +1.1
5,259,137 - +0.9
5,259,144 - -0.5
5,259,172 + +0.7
5,259,371 - IAI46_24625 0.51 +0.3
5,259,371 - IAI46_24625 0.51 -0.5
5,259,371 - IAI46_24625 0.51 -0.8
5,259,430 + IAI46_24625 0.65 +0.3
5,259,463 + IAI46_24625 0.72 -1.0
5,259,464 - IAI46_24625 0.73 +0.5
5,259,464 - IAI46_24625 0.73 +0.8
5,259,500 + IAI46_24625 0.81 +0.8
5,259,572 + +0.1
5,259,573 - -0.4
5,259,573 - +0.4
5,259,573 - +0.4
5,259,573 - +0.4
5,259,624 + +0.0
5,259,624 + +0.6
5,259,624 + +0.4
5,259,624 + +1.5
5,259,624 + +0.8
5,259,625 - -0.3
5,259,625 - +1.8
5,259,629 + +0.5
5,259,629 + +0.4
5,259,630 - +1.5
5,259,672 + -0.8
5,259,672 + +2.4
5,259,774 + +0.3
5,259,774 + -0.3
5,259,774 + -0.9
5,259,774 + -0.5
5,259,775 - -0.6
5,259,775 - +1.2
5,259,775 - -0.5
5,259,776 + +0.7
5,259,776 + +0.1
5,259,776 + -0.1
5,259,776 + -0.7
5,259,776 + -0.2
5,259,776 + -1.5
5,259,777 - +0.9
5,259,777 - +0.1
5,259,777 - -0.6
5,259,777 - +2.0
5,259,778 - +0.2
5,259,882 + IAI46_24630 0.17 -0.3
5,259,883 - IAI46_24630 0.17 +0.6
5,259,939 + IAI46_24630 0.27 +0.0
5,259,941 + IAI46_24630 0.27 +0.2
5,259,983 + IAI46_24630 0.34 +0.1
5,260,036 + IAI46_24630 0.43 -0.6
5,260,036 + IAI46_24630 0.43 -0.4
5,260,037 - IAI46_24630 0.43 +0.3
5,260,103 + IAI46_24630 0.55 +0.1
5,260,104 - IAI46_24630 0.55 +0.2

Or see this region's nucleotide sequence