Strain Fitness in Serratia liquefaciens MT49 around IAI46_23960

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23950 and IAI46_23955 are separated by 48 nucleotidesIAI46_23955 and IAI46_23960 are separated by 184 nucleotidesIAI46_23960 and IAI46_23965 are separated by 365 nucleotides IAI46_23950: IAI46_23950 - YhgN family NAAT transporter, at 5,100,002 to 5,100,595 _23950 IAI46_23955: IAI46_23955 - gluconokinase, at 5,100,644 to 5,101,171 _23955 IAI46_23960: IAI46_23960 - gluconate transporter, at 5,101,356 to 5,102,672 _23960 IAI46_23965: IAI46_23965 - gluconate operon transcriptional repressor GntR, at 5,103,038 to 5,104,033 _23965 Position (kb) 5101 5102 5103Strain fitness (log2 ratio) -1 0 1 2at 5100.581 kb on + strandat 5100.581 kb on + strandat 5100.581 kb on + strandat 5100.582 kb on - strandat 5100.594 kb on - strandat 5100.594 kb on - strandat 5100.594 kb on - strandat 5100.600 kb on + strandat 5100.646 kb on - strandat 5100.667 kb on + strandat 5100.667 kb on + strandat 5100.669 kb on + strandat 5100.852 kb on + strand, within IAI46_23955at 5100.853 kb on - strand, within IAI46_23955at 5100.897 kb on + strand, within IAI46_23955at 5100.961 kb on + strand, within IAI46_23955at 5100.962 kb on - strand, within IAI46_23955at 5101.033 kb on + strand, within IAI46_23955at 5101.144 kb on + strandat 5101.149 kb on - strandat 5101.149 kb on - strandat 5101.165 kb on + strandat 5101.166 kb on - strandat 5101.171 kb on + strandat 5101.171 kb on + strandat 5101.172 kb on - strandat 5101.172 kb on - strandat 5101.172 kb on - strandat 5101.199 kb on + strandat 5101.199 kb on + strandat 5101.200 kb on - strandat 5101.354 kb on + strandat 5101.355 kb on - strandat 5101.357 kb on + strandat 5101.357 kb on + strandat 5101.463 kb on - strandat 5101.665 kb on - strand, within IAI46_23960at 5101.728 kb on + strand, within IAI46_23960at 5101.729 kb on - strand, within IAI46_23960at 5101.821 kb on - strand, within IAI46_23960at 5101.922 kb on + strand, within IAI46_23960at 5101.922 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.048 kb on - strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.144 kb on - strand, within IAI46_23960at 5102.156 kb on + strand, within IAI46_23960at 5102.156 kb on + strand, within IAI46_23960at 5102.157 kb on - strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.333 kb on - strand, within IAI46_23960at 5102.368 kb on - strand, within IAI46_23960at 5102.386 kb on + strand, within IAI46_23960at 5102.414 kb on + strand, within IAI46_23960at 5102.552 kb on + strandat 5102.553 kb on - strandat 5102.597 kb on + strandat 5102.597 kb on + strandat 5102.597 kb on + strandat 5102.613 kb on - strandat 5102.664 kb on + strandat 5102.672 kb on + strandat 5102.708 kb on + strandat 5102.713 kb on + strandat 5102.721 kb on - strandat 5102.721 kb on - strandat 5102.738 kb on + strandat 5102.762 kb on - strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.800 kb on - strandat 5102.800 kb on - strandat 5102.821 kb on - strandat 5102.926 kb on + strandat 5102.927 kb on - strandat 5102.928 kb on + strandat 5102.940 kb on - strandat 5102.963 kb on + strandat 5102.964 kb on - strandat 5102.964 kb on - strandat 5103.145 kb on + strand, within IAI46_23965at 5103.145 kb on + strand, within IAI46_23965at 5103.146 kb on - strand, within IAI46_23965at 5103.307 kb on + strand, within IAI46_23965at 5103.308 kb on - strand, within IAI46_23965at 5103.433 kb on - strand, within IAI46_23965at 5103.449 kb on - strand, within IAI46_23965at 5103.449 kb on - strand, within IAI46_23965at 5103.454 kb on + strand, within IAI46_23965at 5103.454 kb on + strand, within IAI46_23965at 5103.454 kb on + strand, within IAI46_23965at 5103.455 kb on - strand, within IAI46_23965at 5103.455 kb on - strand, within IAI46_23965at 5103.480 kb on + strand, within IAI46_23965at 5103.547 kb on + strand, within IAI46_23965at 5103.548 kb on - strand, within IAI46_23965at 5103.644 kb on - strand, within IAI46_23965

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,100,581 + +0.2
5,100,581 + +0.1
5,100,581 + +0.5
5,100,582 - -0.1
5,100,594 - +0.0
5,100,594 - -1.1
5,100,594 - -0.1
5,100,600 + -0.4
5,100,646 - +0.3
5,100,667 + +0.9
5,100,667 + +0.2
5,100,669 + +0.2
5,100,852 + IAI46_23955 0.39 +0.5
5,100,853 - IAI46_23955 0.40 +0.1
5,100,897 + IAI46_23955 0.48 +0.7
5,100,961 + IAI46_23955 0.60 +0.3
5,100,962 - IAI46_23955 0.60 +0.3
5,101,033 + IAI46_23955 0.74 +0.5
5,101,144 + +0.5
5,101,149 - -1.5
5,101,149 - -0.1
5,101,165 + +0.1
5,101,166 - +0.7
5,101,171 + +0.8
5,101,171 + +0.3
5,101,172 - +0.7
5,101,172 - +0.0
5,101,172 - -0.4
5,101,199 + +0.0
5,101,199 + +0.1
5,101,200 - -0.3
5,101,354 + -0.4
5,101,355 - -0.0
5,101,357 + +0.0
5,101,357 + +0.1
5,101,463 - -0.1
5,101,665 - IAI46_23960 0.23 -1.0
5,101,728 + IAI46_23960 0.28 +0.6
5,101,729 - IAI46_23960 0.28 +0.7
5,101,821 - IAI46_23960 0.35 -0.6
5,101,922 + IAI46_23960 0.43 -0.4
5,101,922 + IAI46_23960 0.43 +1.2
5,102,047 + IAI46_23960 0.52 +0.3
5,102,047 + IAI46_23960 0.52 +1.1
5,102,047 + IAI46_23960 0.52 +0.7
5,102,047 + IAI46_23960 0.52 +0.2
5,102,047 + IAI46_23960 0.52 +0.6
5,102,047 + IAI46_23960 0.52 +0.7
5,102,047 + IAI46_23960 0.52 +0.3
5,102,048 - IAI46_23960 0.53 +2.0
5,102,095 + IAI46_23960 0.56 +0.7
5,102,095 + IAI46_23960 0.56 +0.5
5,102,095 + IAI46_23960 0.56 -0.0
5,102,096 - IAI46_23960 0.56 -0.2
5,102,096 - IAI46_23960 0.56 -0.4
5,102,096 - IAI46_23960 0.56 +0.1
5,102,144 - IAI46_23960 0.60 -0.0
5,102,156 + IAI46_23960 0.61 +0.1
5,102,156 + IAI46_23960 0.61 -0.2
5,102,157 - IAI46_23960 0.61 +0.2
5,102,260 + IAI46_23960 0.69 -0.2
5,102,260 + IAI46_23960 0.69 -0.3
5,102,260 + IAI46_23960 0.69 -0.7
5,102,260 + IAI46_23960 0.69 +0.4
5,102,333 - IAI46_23960 0.74 -0.0
5,102,368 - IAI46_23960 0.77 +0.2
5,102,386 + IAI46_23960 0.78 +0.5
5,102,414 + IAI46_23960 0.80 +0.5
5,102,552 + -0.6
5,102,553 - -0.2
5,102,597 + -0.7
5,102,597 + -0.7
5,102,597 + +0.4
5,102,613 - -0.1
5,102,664 + -0.2
5,102,672 + +0.1
5,102,708 + +0.0
5,102,713 + -1.1
5,102,721 - +0.5
5,102,721 - +0.2
5,102,738 + -0.0
5,102,762 - -1.0
5,102,775 + +1.5
5,102,775 + +0.7
5,102,775 + +0.7
5,102,775 + +0.6
5,102,776 - +0.4
5,102,776 - -0.8
5,102,776 - -0.0
5,102,776 - +0.5
5,102,799 + -0.0
5,102,799 + +0.5
5,102,799 + -0.1
5,102,799 + +0.5
5,102,799 + -0.4
5,102,800 - +1.1
5,102,800 - +0.7
5,102,821 - +0.6
5,102,926 + -0.4
5,102,927 - +1.2
5,102,928 + +0.1
5,102,940 - +0.6
5,102,963 + +0.2
5,102,964 - -0.6
5,102,964 - +0.6
5,103,145 + IAI46_23965 0.11 -0.5
5,103,145 + IAI46_23965 0.11 -1.5
5,103,146 - IAI46_23965 0.11 -0.2
5,103,307 + IAI46_23965 0.27 +0.5
5,103,308 - IAI46_23965 0.27 +0.7
5,103,433 - IAI46_23965 0.40 -0.3
5,103,449 - IAI46_23965 0.41 +0.3
5,103,449 - IAI46_23965 0.41 +0.1
5,103,454 + IAI46_23965 0.42 -0.3
5,103,454 + IAI46_23965 0.42 -1.3
5,103,454 + IAI46_23965 0.42 -0.4
5,103,455 - IAI46_23965 0.42 +0.2
5,103,455 - IAI46_23965 0.42 -0.5
5,103,480 + IAI46_23965 0.44 +1.0
5,103,547 + IAI46_23965 0.51 -0.5
5,103,548 - IAI46_23965 0.51 +0.1
5,103,644 - IAI46_23965 0.61 +0.7

Or see this region's nucleotide sequence