Strain Fitness in Serratia liquefaciens MT49 around IAI46_23800

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23795 and IAI46_23800 are separated by 157 nucleotidesIAI46_23800 and IAI46_23805 are separated by 646 nucleotidesIAI46_23805 and IAI46_23810 are separated by 71 nucleotides IAI46_23795: IAI46_23795 - transcription elongation factor GreB, at 5,059,645 to 5,060,118 _23795 IAI46_23800: IAI46_23800 - RNA-binding transcriptional accessory protein, at 5,060,276 to 5,062,606 _23800 IAI46_23805: IAI46_23805 - ferrous iron transporter A, at 5,063,253 to 5,063,471 _23805 IAI46_23810: IAI46_23810 - Fe(2+) transporter permease subunit FeoB, at 5,063,543 to 5,065,858 _23810 Position (kb) 5060 5061 5062 5063Strain fitness (log2 ratio) -2 -1 0 1 2at 5059.300 kb on + strandat 5059.306 kb on + strandat 5059.306 kb on + strandat 5059.307 kb on - strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.308 kb on + strandat 5059.309 kb on - strandat 5059.309 kb on - strandat 5059.309 kb on - strandat 5059.310 kb on + strandat 5059.310 kb on + strandat 5059.311 kb on - strandat 5059.311 kb on - strandat 5059.311 kb on - strandat 5059.311 kb on - strandat 5059.408 kb on + strandat 5059.408 kb on + strandat 5059.409 kb on - strandat 5059.414 kb on - strandat 5059.420 kb on - strandat 5059.473 kb on + strandat 5059.473 kb on + strandat 5059.473 kb on + strandat 5059.474 kb on - strandat 5059.563 kb on - strandat 5059.675 kb on + strandat 5059.676 kb on - strandat 5059.676 kb on - strandat 5059.786 kb on + strand, within IAI46_23795at 5059.787 kb on - strand, within IAI46_23795at 5059.792 kb on + strand, within IAI46_23795at 5059.830 kb on - strand, within IAI46_23795at 5059.830 kb on - strand, within IAI46_23795at 5059.834 kb on + strand, within IAI46_23795at 5059.834 kb on + strand, within IAI46_23795at 5059.835 kb on - strand, within IAI46_23795at 5059.835 kb on - strand, within IAI46_23795at 5059.859 kb on + strand, within IAI46_23795at 5059.860 kb on - strand, within IAI46_23795at 5059.873 kb on + strand, within IAI46_23795at 5059.874 kb on - strand, within IAI46_23795at 5059.919 kb on + strand, within IAI46_23795at 5059.919 kb on + strand, within IAI46_23795at 5059.944 kb on + strand, within IAI46_23795at 5059.945 kb on - strand, within IAI46_23795at 5059.945 kb on - strand, within IAI46_23795at 5059.993 kb on + strand, within IAI46_23795at 5059.993 kb on + strand, within IAI46_23795at 5059.994 kb on - strand, within IAI46_23795at 5060.032 kb on - strand, within IAI46_23795at 5060.061 kb on + strand, within IAI46_23795at 5060.061 kb on + strand, within IAI46_23795at 5060.064 kb on + strand, within IAI46_23795at 5060.064 kb on + strand, within IAI46_23795at 5060.065 kb on - strand, within IAI46_23795at 5060.089 kb on + strandat 5060.090 kb on - strandat 5060.108 kb on - strandat 5060.112 kb on - strandat 5060.112 kb on - strandat 5060.112 kb on - strandat 5060.116 kb on + strandat 5060.158 kb on - strandat 5060.169 kb on + strandat 5060.170 kb on - strandat 5060.170 kb on - strandat 5060.177 kb on - strandat 5060.177 kb on - strandat 5060.177 kb on - strandat 5060.229 kb on - strandat 5060.229 kb on - strandat 5060.230 kb on + strandat 5060.246 kb on + strandat 5060.266 kb on + strandat 5060.267 kb on - strandat 5060.275 kb on + strandat 5060.275 kb on + strandat 5060.276 kb on - strandat 5060.300 kb on - strandat 5060.300 kb on - strandat 5060.365 kb on + strandat 5060.365 kb on + strandat 5060.365 kb on + strandat 5060.366 kb on - strandat 5060.366 kb on - strandat 5060.366 kb on - strandat 5060.366 kb on - strandat 5060.366 kb on - strandat 5060.368 kb on + strandat 5060.368 kb on + strandat 5060.369 kb on - strandat 5060.380 kb on + strandat 5060.380 kb on + strandat 5060.380 kb on + strandat 5060.381 kb on - strandat 5060.395 kb on + strandat 5060.396 kb on - strandat 5060.396 kb on - strandat 5060.396 kb on - strandat 5060.423 kb on - strandat 5060.494 kb on + strandat 5060.494 kb on + strandat 5060.495 kb on - strandat 5060.582 kb on + strand, within IAI46_23800at 5060.583 kb on - strand, within IAI46_23800at 5060.583 kb on - strand, within IAI46_23800at 5060.591 kb on + strand, within IAI46_23800at 5060.591 kb on + strand, within IAI46_23800at 5060.705 kb on + strand, within IAI46_23800at 5060.705 kb on + strand, within IAI46_23800at 5060.705 kb on + strand, within IAI46_23800at 5060.706 kb on - strand, within IAI46_23800at 5060.711 kb on - strand, within IAI46_23800at 5060.736 kb on + strand, within IAI46_23800at 5060.736 kb on + strand, within IAI46_23800at 5060.762 kb on + strand, within IAI46_23800at 5060.762 kb on + strand, within IAI46_23800at 5060.762 kb on + strand, within IAI46_23800at 5060.762 kb on + strand, within IAI46_23800at 5060.762 kb on + strand, within IAI46_23800at 5060.763 kb on - strand, within IAI46_23800at 5060.763 kb on - strand, within IAI46_23800at 5060.763 kb on - strand, within IAI46_23800at 5060.763 kb on - strand, within IAI46_23800at 5060.764 kb on + strand, within IAI46_23800at 5060.765 kb on - strand, within IAI46_23800at 5060.799 kb on + strand, within IAI46_23800at 5060.800 kb on - strand, within IAI46_23800at 5060.819 kb on + strand, within IAI46_23800at 5060.819 kb on + strand, within IAI46_23800at 5060.819 kb on + strand, within IAI46_23800at 5060.820 kb on - strand, within IAI46_23800at 5060.820 kb on - strand, within IAI46_23800at 5060.899 kb on - strand, within IAI46_23800at 5060.973 kb on + strand, within IAI46_23800at 5060.973 kb on + strand, within IAI46_23800at 5060.973 kb on + strand, within IAI46_23800at 5060.973 kb on + strand, within IAI46_23800at 5060.973 kb on + strand, within IAI46_23800at 5060.973 kb on + strand, within IAI46_23800at 5060.974 kb on - strand, within IAI46_23800at 5060.974 kb on - strand, within IAI46_23800at 5061.124 kb on + strand, within IAI46_23800at 5061.125 kb on - strand, within IAI46_23800at 5061.314 kb on - strand, within IAI46_23800at 5061.345 kb on - strand, within IAI46_23800at 5061.406 kb on + strand, within IAI46_23800at 5061.406 kb on + strand, within IAI46_23800at 5061.406 kb on + strand, within IAI46_23800at 5061.799 kb on - strand, within IAI46_23800at 5061.830 kb on - strand, within IAI46_23800at 5061.938 kb on - strand, within IAI46_23800at 5061.990 kb on - strand, within IAI46_23800at 5062.279 kb on + strand, within IAI46_23800at 5062.280 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.282 kb on - strand, within IAI46_23800at 5062.309 kb on + strand, within IAI46_23800at 5062.309 kb on + strand, within IAI46_23800at 5062.309 kb on + strand, within IAI46_23800at 5062.309 kb on + strand, within IAI46_23800at 5062.309 kb on + strand, within IAI46_23800at 5062.310 kb on - strand, within IAI46_23800at 5062.310 kb on - strand, within IAI46_23800at 5062.310 kb on - strand, within IAI46_23800at 5062.310 kb on - strand, within IAI46_23800at 5062.519 kb on + strandat 5062.519 kb on + strandat 5062.519 kb on + strandat 5062.520 kb on - strandat 5062.669 kb on - strandat 5062.669 kb on - strandat 5062.672 kb on + strandat 5062.672 kb on + strandat 5062.673 kb on - strandat 5062.673 kb on - strandat 5062.673 kb on - strandat 5062.740 kb on + strandat 5062.753 kb on - strandat 5062.770 kb on + strandat 5062.771 kb on - strandat 5062.771 kb on - strandat 5062.771 kb on - strandat 5062.775 kb on - strandat 5062.782 kb on + strandat 5062.785 kb on + strandat 5062.786 kb on - strandat 5062.794 kb on + strandat 5062.794 kb on + strandat 5062.795 kb on - strandat 5062.798 kb on - strandat 5062.803 kb on + strandat 5062.867 kb on + strandat 5062.867 kb on + strandat 5062.868 kb on - strandat 5062.879 kb on + strandat 5062.879 kb on + strandat 5062.884 kb on - strandat 5062.954 kb on + strandat 5062.955 kb on - strandat 5062.960 kb on + strandat 5062.960 kb on + strandat 5062.960 kb on + strandat 5062.961 kb on - strandat 5063.013 kb on + strandat 5063.045 kb on + strandat 5063.045 kb on + strandat 5063.241 kb on - strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.250 kb on + strandat 5063.251 kb on - strandat 5063.277 kb on + strand, within IAI46_23805at 5063.277 kb on + strand, within IAI46_23805at 5063.279 kb on + strand, within IAI46_23805at 5063.279 kb on + strand, within IAI46_23805at 5063.280 kb on - strand, within IAI46_23805at 5063.280 kb on - strand, within IAI46_23805at 5063.333 kb on - strand, within IAI46_23805at 5063.371 kb on + strand, within IAI46_23805at 5063.372 kb on - strand, within IAI46_23805at 5063.372 kb on - strand, within IAI46_23805at 5063.399 kb on - strand, within IAI46_23805at 5063.404 kb on + strand, within IAI46_23805at 5063.529 kb on + strandat 5063.529 kb on + strandat 5063.529 kb on + strandat 5063.530 kb on - strandat 5063.538 kb on - strandat 5063.558 kb on - strandat 5063.565 kb on + strandat 5063.565 kb on + strandat 5063.569 kb on - strandat 5063.569 kb on - strandat 5063.593 kb on + strandat 5063.593 kb on + strandat 5063.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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5,059,300 + +1.2
5,059,306 + -0.4
5,059,306 + -0.3
5,059,307 - -0.0
5,059,308 + +0.5
5,059,308 + -0.2
5,059,308 + -0.1
5,059,308 + +0.4
5,059,308 + +0.6
5,059,309 - +0.5
5,059,309 - +1.3
5,059,309 - -0.5
5,059,310 + +1.9
5,059,310 + -0.0
5,059,311 - -0.6
5,059,311 - +0.2
5,059,311 - +0.5
5,059,311 - +0.3
5,059,408 + -0.2
5,059,408 + -1.2
5,059,409 - -0.7
5,059,414 - +0.0
5,059,420 - +0.7
5,059,473 + -0.6
5,059,473 + +0.5
5,059,473 + -1.1
5,059,474 - +0.6
5,059,563 - +0.2
5,059,675 + +0.3
5,059,676 - +0.3
5,059,676 - +0.5
5,059,786 + IAI46_23795 0.30 -0.0
5,059,787 - IAI46_23795 0.30 +0.0
5,059,792 + IAI46_23795 0.31 -0.7
5,059,830 - IAI46_23795 0.39 -0.2
5,059,830 - IAI46_23795 0.39 +0.1
5,059,834 + IAI46_23795 0.40 +0.3
5,059,834 + IAI46_23795 0.40 +0.1
5,059,835 - IAI46_23795 0.40 +1.1
5,059,835 - IAI46_23795 0.40 -0.7
5,059,859 + IAI46_23795 0.45 +0.0
5,059,860 - IAI46_23795 0.45 +0.4
5,059,873 + IAI46_23795 0.48 +0.7
5,059,874 - IAI46_23795 0.48 -0.2
5,059,919 + IAI46_23795 0.58 +0.3
5,059,919 + IAI46_23795 0.58 -0.7
5,059,944 + IAI46_23795 0.63 +1.0
5,059,945 - IAI46_23795 0.63 +0.3
5,059,945 - IAI46_23795 0.63 -1.5
5,059,993 + IAI46_23795 0.73 -0.9
5,059,993 + IAI46_23795 0.73 +0.4
5,059,994 - IAI46_23795 0.74 -1.4
5,060,032 - IAI46_23795 0.82 +0.5
5,060,061 + IAI46_23795 0.88 +0.6
5,060,061 + IAI46_23795 0.88 -0.8
5,060,064 + IAI46_23795 0.88 +0.6
5,060,064 + IAI46_23795 0.88 +1.2
5,060,065 - IAI46_23795 0.89 +0.3
5,060,089 + +1.5
5,060,090 - -0.1
5,060,108 - -0.3
5,060,112 - -0.2
5,060,112 - +1.3
5,060,112 - +0.7
5,060,116 + -0.6
5,060,158 - -0.9
5,060,169 + +0.7
5,060,170 - -0.3
5,060,170 - -0.1
5,060,177 - +0.3
5,060,177 - -0.4
5,060,177 - +0.1
5,060,229 - +0.3
5,060,229 - +0.9
5,060,230 + -0.7
5,060,246 + +1.1
5,060,266 + -0.2
5,060,267 - +0.4
5,060,275 + +0.4
5,060,275 + +0.2
5,060,276 - +0.1
5,060,300 - -0.4
5,060,300 - -0.0
5,060,365 + +0.3
5,060,365 + +0.1
5,060,365 + -0.5
5,060,366 - -0.3
5,060,366 - +0.7
5,060,366 - +0.6
5,060,366 - +0.4
5,060,366 - -0.2
5,060,368 + -0.4
5,060,368 + +2.5
5,060,369 - +0.7
5,060,380 + +1.1
5,060,380 + +0.3
5,060,380 + +0.3
5,060,381 - -0.9
5,060,395 + +0.0
5,060,396 - +0.5
5,060,396 - -1.4
5,060,396 - +1.3
5,060,423 - -0.1
5,060,494 + -0.2
5,060,494 + -0.5
5,060,495 - +0.4
5,060,582 + IAI46_23800 0.13 -1.0
5,060,583 - IAI46_23800 0.13 +1.2
5,060,583 - IAI46_23800 0.13 +0.5
5,060,591 + IAI46_23800 0.14 +0.5
5,060,591 + IAI46_23800 0.14 -0.7
5,060,705 + IAI46_23800 0.18 +1.3
5,060,705 + IAI46_23800 0.18 -0.7
5,060,705 + IAI46_23800 0.18 +0.4
5,060,706 - IAI46_23800 0.18 +0.3
5,060,711 - IAI46_23800 0.19 -0.3
5,060,736 + IAI46_23800 0.20 +0.4
5,060,736 + IAI46_23800 0.20 -0.1
5,060,762 + IAI46_23800 0.21 +1.5
5,060,762 + IAI46_23800 0.21 +0.3
5,060,762 + IAI46_23800 0.21 -0.9
5,060,762 + IAI46_23800 0.21 +0.4
5,060,762 + IAI46_23800 0.21 +0.4
5,060,763 - IAI46_23800 0.21 -0.7
5,060,763 - IAI46_23800 0.21 -0.1
5,060,763 - IAI46_23800 0.21 +0.4
5,060,763 - IAI46_23800 0.21 +1.3
5,060,764 + IAI46_23800 0.21 +0.3
5,060,765 - IAI46_23800 0.21 +0.1
5,060,799 + IAI46_23800 0.22 -0.0
5,060,800 - IAI46_23800 0.22 +0.6
5,060,819 + IAI46_23800 0.23 +0.7
5,060,819 + IAI46_23800 0.23 +0.9
5,060,819 + IAI46_23800 0.23 -0.7
5,060,820 - IAI46_23800 0.23 +0.4
5,060,820 - IAI46_23800 0.23 -0.8
5,060,899 - IAI46_23800 0.27 -0.1
5,060,973 + IAI46_23800 0.30 +1.4
5,060,973 + IAI46_23800 0.30 +1.1
5,060,973 + IAI46_23800 0.30 -0.5
5,060,973 + IAI46_23800 0.30 +0.1
5,060,973 + IAI46_23800 0.30 +0.9
5,060,973 + IAI46_23800 0.30 +0.1
5,060,974 - IAI46_23800 0.30 -0.0
5,060,974 - IAI46_23800 0.30 -0.8
5,061,124 + IAI46_23800 0.36 -1.7
5,061,125 - IAI46_23800 0.36 +0.7
5,061,314 - IAI46_23800 0.45 +0.8
5,061,345 - IAI46_23800 0.46 -0.7
5,061,406 + IAI46_23800 0.48 -0.2
5,061,406 + IAI46_23800 0.48 +0.4
5,061,406 + IAI46_23800 0.48 +0.5
5,061,799 - IAI46_23800 0.65 +0.1
5,061,830 - IAI46_23800 0.67 -0.2
5,061,938 - IAI46_23800 0.71 +2.5
5,061,990 - IAI46_23800 0.74 +0.8
5,062,279 + IAI46_23800 0.86 -0.3
5,062,280 - IAI46_23800 0.86 +1.6
5,062,282 - IAI46_23800 0.86 +0.3
5,062,282 - IAI46_23800 0.86 -0.5
5,062,282 - IAI46_23800 0.86 -1.2
5,062,282 - IAI46_23800 0.86 +0.0
5,062,282 - IAI46_23800 0.86 -0.1
5,062,282 - IAI46_23800 0.86 -0.4
5,062,282 - IAI46_23800 0.86 +0.1
5,062,309 + IAI46_23800 0.87 +0.8
5,062,309 + IAI46_23800 0.87 -1.3
5,062,309 + IAI46_23800 0.87 +0.3
5,062,309 + IAI46_23800 0.87 -0.2
5,062,309 + IAI46_23800 0.87 -0.8
5,062,310 - IAI46_23800 0.87 -0.3
5,062,310 - IAI46_23800 0.87 +0.0
5,062,310 - IAI46_23800 0.87 +0.2
5,062,310 - IAI46_23800 0.87 -0.4
5,062,519 + +1.2
5,062,519 + -0.3
5,062,519 + +0.0
5,062,520 - +0.6
5,062,669 - +0.8
5,062,669 - +1.8
5,062,672 + -0.1
5,062,672 + -0.1
5,062,673 - -0.8
5,062,673 - +0.7
5,062,673 - +0.8
5,062,740 + -2.3
5,062,753 - +0.1
5,062,770 + -0.0
5,062,771 - -0.1
5,062,771 - -2.2
5,062,771 - +0.4
5,062,775 - +1.3
5,062,782 + -1.3
5,062,785 + +0.3
5,062,786 - +0.2
5,062,794 + +1.0
5,062,794 + +0.4
5,062,795 - +0.6
5,062,798 - -0.5
5,062,803 + -0.1
5,062,867 + +0.4
5,062,867 + +0.1
5,062,868 - +0.4
5,062,879 + +0.5
5,062,879 + -0.1
5,062,884 - +2.4
5,062,954 + +0.1
5,062,955 - +1.0
5,062,960 + +1.1
5,062,960 + +0.1
5,062,960 + +0.8
5,062,961 - -0.2
5,063,013 + -0.6
5,063,045 + +0.5
5,063,045 + -0.5
5,063,241 - -0.6
5,063,250 + +0.3
5,063,250 + +0.7
5,063,250 + -0.9
5,063,250 + -0.9
5,063,250 + +0.1
5,063,250 + +0.8
5,063,250 + -0.1
5,063,250 + -0.4
5,063,251 - +0.1
5,063,277 + IAI46_23805 0.11 +0.8
5,063,277 + IAI46_23805 0.11 -1.7
5,063,279 + IAI46_23805 0.12 +0.2
5,063,279 + IAI46_23805 0.12 -0.2
5,063,280 - IAI46_23805 0.12 -1.8
5,063,280 - IAI46_23805 0.12 -0.7
5,063,333 - IAI46_23805 0.37 -0.7
5,063,371 + IAI46_23805 0.54 +0.6
5,063,372 - IAI46_23805 0.54 +0.2
5,063,372 - IAI46_23805 0.54 +0.5
5,063,399 - IAI46_23805 0.67 +1.2
5,063,404 + IAI46_23805 0.69 -0.2
5,063,529 + -0.5
5,063,529 + -0.1
5,063,529 + -0.3
5,063,530 - +0.0
5,063,538 - -0.1
5,063,558 - +0.8
5,063,565 + -0.6
5,063,565 + -0.1
5,063,569 - +0.6
5,063,569 - +0.3
5,063,593 + -0.9
5,063,593 + -1.2
5,063,594 - +0.2

Or see this region's nucleotide sequence