Strain Fitness in Serratia liquefaciens MT49 around IAI46_22695

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22685 and IAI46_22690 are separated by 7 nucleotidesIAI46_22690 and IAI46_22695 overlap by 4 nucleotidesIAI46_22695 and IAI46_22700 are separated by 105 nucleotides IAI46_22685: IAI46_22685 - metalloprotease TldD, at 4,826,905 to 4,828,350 _22685 IAI46_22690: IAI46_22690 - carbon-nitrogen hydrolase family protein, at 4,828,358 to 4,829,218 _22690 IAI46_22695: IAI46_22695 - AsmA2 domain-containing protein YhdP, at 4,829,215 to 4,833,030 _22695 IAI46_22700: IAI46_22700 - ribonuclease G, at 4,833,136 to 4,834,605 _22700 Position (kb) 4829 4830 4831 4832 4833 4834Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4828.220 kb on + strandat 4828.221 kb on - strandat 4828.221 kb on - strandat 4828.221 kb on - strandat 4828.235 kb on + strandat 4828.236 kb on - strandat 4828.236 kb on - strandat 4828.309 kb on - strandat 4828.321 kb on + strandat 4828.322 kb on - strandat 4828.637 kb on + strand, within IAI46_22690at 4828.637 kb on + strand, within IAI46_22690at 4828.638 kb on - strand, within IAI46_22690at 4828.638 kb on - strand, within IAI46_22690at 4828.812 kb on + strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.813 kb on - strand, within IAI46_22690at 4828.849 kb on + strand, within IAI46_22690at 4828.928 kb on - strand, within IAI46_22690at 4828.928 kb on - strand, within IAI46_22690at 4828.933 kb on + strand, within IAI46_22690at 4828.933 kb on + strand, within IAI46_22690at 4828.934 kb on - strand, within IAI46_22690at 4829.062 kb on - strand, within IAI46_22690at 4829.134 kb on + strandat 4829.134 kb on + strandat 4829.193 kb on - strandat 4829.193 kb on - strandat 4829.207 kb on - strandat 4829.242 kb on - strandat 4829.521 kb on + strandat 4829.521 kb on + strandat 4829.522 kb on - strandat 4829.522 kb on - strandat 4829.522 kb on - strandat 4829.564 kb on + strandat 4829.602 kb on + strand, within IAI46_22695at 4829.602 kb on + strand, within IAI46_22695at 4829.611 kb on + strand, within IAI46_22695at 4829.719 kb on - strand, within IAI46_22695at 4829.774 kb on + strand, within IAI46_22695at 4829.774 kb on + strand, within IAI46_22695at 4829.775 kb on - strand, within IAI46_22695at 4829.848 kb on - strand, within IAI46_22695at 4829.953 kb on - strand, within IAI46_22695at 4830.018 kb on + strand, within IAI46_22695at 4830.019 kb on - strand, within IAI46_22695at 4830.105 kb on + strand, within IAI46_22695at 4830.128 kb on + strand, within IAI46_22695at 4830.128 kb on + strand, within IAI46_22695at 4830.129 kb on - strand, within IAI46_22695at 4830.131 kb on + strand, within IAI46_22695at 4830.132 kb on - strand, within IAI46_22695at 4830.132 kb on - strand, within IAI46_22695at 4830.132 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.138 kb on - strand, within IAI46_22695at 4830.178 kb on + strand, within IAI46_22695at 4830.255 kb on + strand, within IAI46_22695at 4830.256 kb on - strand, within IAI46_22695at 4830.256 kb on - strand, within IAI46_22695at 4830.274 kb on + strand, within IAI46_22695at 4830.274 kb on + strand, within IAI46_22695at 4830.275 kb on - strand, within IAI46_22695at 4830.275 kb on - strand, within IAI46_22695at 4830.319 kb on - strand, within IAI46_22695at 4830.581 kb on - strand, within IAI46_22695at 4830.581 kb on - strand, within IAI46_22695at 4830.617 kb on - strand, within IAI46_22695at 4830.628 kb on + strand, within IAI46_22695at 4830.641 kb on - strand, within IAI46_22695at 4830.674 kb on + strand, within IAI46_22695at 4830.675 kb on - strand, within IAI46_22695at 4830.675 kb on - strand, within IAI46_22695at 4830.675 kb on - strand, within IAI46_22695at 4830.675 kb on - strand, within IAI46_22695at 4830.705 kb on + strand, within IAI46_22695at 4830.705 kb on + strand, within IAI46_22695at 4830.706 kb on - strand, within IAI46_22695at 4830.954 kb on + strand, within IAI46_22695at 4830.955 kb on - strand, within IAI46_22695at 4830.975 kb on + strand, within IAI46_22695at 4830.975 kb on + strand, within IAI46_22695at 4830.975 kb on + strand, within IAI46_22695at 4830.975 kb on + strand, within IAI46_22695at 4830.976 kb on - strand, within IAI46_22695at 4830.976 kb on - strand, within IAI46_22695at 4830.976 kb on - strand, within IAI46_22695at 4831.039 kb on + strand, within IAI46_22695at 4831.121 kb on + strand, within IAI46_22695at 4831.121 kb on + strand, within IAI46_22695at 4831.184 kb on + strand, within IAI46_22695at 4831.185 kb on - strand, within IAI46_22695at 4831.213 kb on - strand, within IAI46_22695at 4831.406 kb on + strand, within IAI46_22695at 4831.406 kb on + strand, within IAI46_22695at 4831.407 kb on - strand, within IAI46_22695at 4831.457 kb on + strand, within IAI46_22695at 4831.458 kb on - strand, within IAI46_22695at 4831.521 kb on - strand, within IAI46_22695at 4831.542 kb on + strand, within IAI46_22695at 4831.564 kb on - strand, within IAI46_22695at 4831.713 kb on + strand, within IAI46_22695at 4831.713 kb on + strand, within IAI46_22695at 4831.714 kb on - strand, within IAI46_22695at 4831.714 kb on - strand, within IAI46_22695at 4831.714 kb on - strand, within IAI46_22695at 4831.714 kb on - strand, within IAI46_22695at 4831.978 kb on + strand, within IAI46_22695at 4832.246 kb on - strand, within IAI46_22695at 4832.326 kb on - strand, within IAI46_22695at 4832.363 kb on + strand, within IAI46_22695at 4832.367 kb on + strand, within IAI46_22695at 4832.382 kb on + strand, within IAI46_22695at 4832.383 kb on - strand, within IAI46_22695at 4832.383 kb on - strand, within IAI46_22695at 4832.383 kb on - strand, within IAI46_22695at 4832.383 kb on - strand, within IAI46_22695at 4832.384 kb on + strand, within IAI46_22695at 4832.384 kb on + strand, within IAI46_22695at 4832.384 kb on + strand, within IAI46_22695at 4832.385 kb on - strand, within IAI46_22695at 4832.385 kb on - strand, within IAI46_22695at 4832.385 kb on - strand, within IAI46_22695at 4832.385 kb on - strand, within IAI46_22695at 4832.404 kb on + strand, within IAI46_22695at 4832.404 kb on + strand, within IAI46_22695at 4832.405 kb on - strand, within IAI46_22695at 4832.415 kb on + strand, within IAI46_22695at 4832.416 kb on - strand, within IAI46_22695at 4832.683 kb on - strandat 4832.683 kb on - strandat 4832.710 kb on - strandat 4832.710 kb on - strandat 4832.924 kb on + strandat 4832.925 kb on - strandat 4833.000 kb on + strandat 4833.001 kb on - strandat 4833.001 kb on - strandat 4833.004 kb on + strandat 4833.005 kb on - strandat 4833.005 kb on - strandat 4833.067 kb on + strandat 4833.067 kb on + strandat 4833.067 kb on + strandat 4833.067 kb on + strandat 4833.068 kb on - strandat 4833.071 kb on + strandat 4833.071 kb on + strandat 4833.071 kb on + strandat 4833.071 kb on + strandat 4833.071 kb on + strandat 4833.071 kb on + strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.072 kb on - strandat 4833.090 kb on + strandat 4833.090 kb on + strandat 4833.090 kb on + strandat 4833.091 kb on - strandat 4833.091 kb on - strandat 4833.091 kb on - strandat 4833.118 kb on + strandat 4833.137 kb on + strandat 4833.137 kb on + strandat 4833.137 kb on + strandat 4833.137 kb on + strandat 4833.138 kb on - strandat 4833.170 kb on + strandat 4833.173 kb on - strandat 4833.173 kb on - strandat 4833.187 kb on + strandat 4833.278 kb on + strandat 4833.302 kb on + strand, within IAI46_22700at 4833.302 kb on + strand, within IAI46_22700at 4833.302 kb on + strand, within IAI46_22700at 4833.303 kb on - strand, within IAI46_22700at 4833.303 kb on - strand, within IAI46_22700at 4833.303 kb on - strand, within IAI46_22700at 4833.387 kb on + strand, within IAI46_22700at 4833.400 kb on - strand, within IAI46_22700at 4833.429 kb on + strand, within IAI46_22700at 4833.451 kb on + strand, within IAI46_22700at 4833.451 kb on + strand, within IAI46_22700at 4833.452 kb on - strand, within IAI46_22700at 4833.458 kb on - strand, within IAI46_22700at 4833.458 kb on - strand, within IAI46_22700at 4833.458 kb on - strand, within IAI46_22700at 4833.458 kb on - strand, within IAI46_22700at 4833.498 kb on + strand, within IAI46_22700at 4833.576 kb on + strand, within IAI46_22700at 4833.576 kb on + strand, within IAI46_22700at 4833.577 kb on - strand, within IAI46_22700at 4833.577 kb on - strand, within IAI46_22700at 4833.577 kb on - strand, within IAI46_22700at 4833.577 kb on - strand, within IAI46_22700at 4833.735 kb on - strand, within IAI46_22700at 4833.778 kb on + strand, within IAI46_22700at 4833.779 kb on - strand, within IAI46_22700at 4833.797 kb on + strand, within IAI46_22700at 4833.797 kb on + strand, within IAI46_22700at 4833.797 kb on + strand, within IAI46_22700at 4833.827 kb on + strand, within IAI46_22700at 4833.827 kb on + strand, within IAI46_22700at 4833.828 kb on - strand, within IAI46_22700at 4833.861 kb on - strand, within IAI46_22700at 4833.861 kb on - strand, within IAI46_22700at 4833.870 kb on + strand, within IAI46_22700at 4833.979 kb on + strand, within IAI46_22700at 4833.980 kb on - strand, within IAI46_22700at 4833.987 kb on - strand, within IAI46_22700

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,828,220 + +0.2
4,828,221 - +0.3
4,828,221 - +0.6
4,828,221 - -0.6
4,828,235 + -0.2
4,828,236 - -0.1
4,828,236 - +0.1
4,828,309 - +0.6
4,828,321 + -0.1
4,828,322 - -0.2
4,828,637 + IAI46_22690 0.32 -0.4
4,828,637 + IAI46_22690 0.32 +0.0
4,828,638 - IAI46_22690 0.33 -1.3
4,828,638 - IAI46_22690 0.33 +0.2
4,828,812 + IAI46_22690 0.53 -1.1
4,828,813 - IAI46_22690 0.53 +0.5
4,828,813 - IAI46_22690 0.53 +0.2
4,828,813 - IAI46_22690 0.53 +0.7
4,828,813 - IAI46_22690 0.53 +0.6
4,828,813 - IAI46_22690 0.53 +0.4
4,828,849 + IAI46_22690 0.57 -0.2
4,828,928 - IAI46_22690 0.66 -1.3
4,828,928 - IAI46_22690 0.66 +0.0
4,828,933 + IAI46_22690 0.67 -0.6
4,828,933 + IAI46_22690 0.67 +0.3
4,828,934 - IAI46_22690 0.67 +0.6
4,829,062 - IAI46_22690 0.82 -0.9
4,829,134 + +0.2
4,829,134 + -0.3
4,829,193 - -0.3
4,829,193 - -0.4
4,829,207 - +0.9
4,829,242 - +0.7
4,829,521 + -1.1
4,829,521 + +1.2
4,829,522 - +1.2
4,829,522 - -0.0
4,829,522 - +1.3
4,829,564 + -0.2
4,829,602 + IAI46_22695 0.10 +0.4
4,829,602 + IAI46_22695 0.10 +0.1
4,829,611 + IAI46_22695 0.10 +1.6
4,829,719 - IAI46_22695 0.13 +0.4
4,829,774 + IAI46_22695 0.15 +1.5
4,829,774 + IAI46_22695 0.15 +0.0
4,829,775 - IAI46_22695 0.15 -0.4
4,829,848 - IAI46_22695 0.17 -1.7
4,829,953 - IAI46_22695 0.19 +0.5
4,830,018 + IAI46_22695 0.21 +0.4
4,830,019 - IAI46_22695 0.21 -0.1
4,830,105 + IAI46_22695 0.23 +0.6
4,830,128 + IAI46_22695 0.24 -0.6
4,830,128 + IAI46_22695 0.24 +0.0
4,830,129 - IAI46_22695 0.24 -0.1
4,830,131 + IAI46_22695 0.24 +0.5
4,830,132 - IAI46_22695 0.24 +0.7
4,830,132 - IAI46_22695 0.24 +0.1
4,830,132 - IAI46_22695 0.24 +0.1
4,830,138 - IAI46_22695 0.24 +0.4
4,830,138 - IAI46_22695 0.24 -1.6
4,830,138 - IAI46_22695 0.24 +0.1
4,830,138 - IAI46_22695 0.24 +0.5
4,830,138 - IAI46_22695 0.24 +1.2
4,830,178 + IAI46_22695 0.25 -1.0
4,830,255 + IAI46_22695 0.27 +0.1
4,830,256 - IAI46_22695 0.27 -0.8
4,830,256 - IAI46_22695 0.27 +0.7
4,830,274 + IAI46_22695 0.28 +0.3
4,830,274 + IAI46_22695 0.28 +2.9
4,830,275 - IAI46_22695 0.28 -1.2
4,830,275 - IAI46_22695 0.28 -0.6
4,830,319 - IAI46_22695 0.29 -0.3
4,830,581 - IAI46_22695 0.36 +0.7
4,830,581 - IAI46_22695 0.36 +0.1
4,830,617 - IAI46_22695 0.37 +0.3
4,830,628 + IAI46_22695 0.37 +0.9
4,830,641 - IAI46_22695 0.37 -0.1
4,830,674 + IAI46_22695 0.38 -0.2
4,830,675 - IAI46_22695 0.38 +0.2
4,830,675 - IAI46_22695 0.38 -1.2
4,830,675 - IAI46_22695 0.38 +0.2
4,830,675 - IAI46_22695 0.38 +0.4
4,830,705 + IAI46_22695 0.39 +0.4
4,830,705 + IAI46_22695 0.39 +0.6
4,830,706 - IAI46_22695 0.39 -0.1
4,830,954 + IAI46_22695 0.46 -0.5
4,830,955 - IAI46_22695 0.46 +0.1
4,830,975 + IAI46_22695 0.46 -0.1
4,830,975 + IAI46_22695 0.46 +0.5
4,830,975 + IAI46_22695 0.46 +0.1
4,830,975 + IAI46_22695 0.46 +0.5
4,830,976 - IAI46_22695 0.46 +0.1
4,830,976 - IAI46_22695 0.46 -1.7
4,830,976 - IAI46_22695 0.46 -1.0
4,831,039 + IAI46_22695 0.48 -0.8
4,831,121 + IAI46_22695 0.50 -1.5
4,831,121 + IAI46_22695 0.50 +0.3
4,831,184 + IAI46_22695 0.52 -0.3
4,831,185 - IAI46_22695 0.52 -0.3
4,831,213 - IAI46_22695 0.52 +0.8
4,831,406 + IAI46_22695 0.57 -0.8
4,831,406 + IAI46_22695 0.57 -0.0
4,831,407 - IAI46_22695 0.57 -1.9
4,831,457 + IAI46_22695 0.59 -2.2
4,831,458 - IAI46_22695 0.59 +0.4
4,831,521 - IAI46_22695 0.60 -0.9
4,831,542 + IAI46_22695 0.61 +0.4
4,831,564 - IAI46_22695 0.62 +0.2
4,831,713 + IAI46_22695 0.65 -0.5
4,831,713 + IAI46_22695 0.65 +0.2
4,831,714 - IAI46_22695 0.65 +0.2
4,831,714 - IAI46_22695 0.65 +0.4
4,831,714 - IAI46_22695 0.65 +0.2
4,831,714 - IAI46_22695 0.65 +0.1
4,831,978 + IAI46_22695 0.72 -0.3
4,832,246 - IAI46_22695 0.79 +0.3
4,832,326 - IAI46_22695 0.82 +0.4
4,832,363 + IAI46_22695 0.82 +0.9
4,832,367 + IAI46_22695 0.83 -0.2
4,832,382 + IAI46_22695 0.83 +0.2
4,832,383 - IAI46_22695 0.83 +0.1
4,832,383 - IAI46_22695 0.83 -0.9
4,832,383 - IAI46_22695 0.83 +0.5
4,832,383 - IAI46_22695 0.83 -0.1
4,832,384 + IAI46_22695 0.83 +1.9
4,832,384 + IAI46_22695 0.83 +0.8
4,832,384 + IAI46_22695 0.83 +0.4
4,832,385 - IAI46_22695 0.83 -0.0
4,832,385 - IAI46_22695 0.83 +0.4
4,832,385 - IAI46_22695 0.83 +0.6
4,832,385 - IAI46_22695 0.83 -1.9
4,832,404 + IAI46_22695 0.84 -1.0
4,832,404 + IAI46_22695 0.84 +0.8
4,832,405 - IAI46_22695 0.84 +1.0
4,832,415 + IAI46_22695 0.84 -1.0
4,832,416 - IAI46_22695 0.84 -0.3
4,832,683 - +1.0
4,832,683 - -0.1
4,832,710 - +0.1
4,832,710 - +0.2
4,832,924 + -0.4
4,832,925 - +0.0
4,833,000 + -0.1
4,833,001 - -0.1
4,833,001 - +0.1
4,833,004 + -0.7
4,833,005 - -0.5
4,833,005 - +0.1
4,833,067 + +0.7
4,833,067 + -1.0
4,833,067 + -0.0
4,833,067 + +0.3
4,833,068 - -0.6
4,833,071 + +0.4
4,833,071 + +0.5
4,833,071 + +1.2
4,833,071 + -0.0
4,833,071 + +0.4
4,833,071 + +0.5
4,833,072 - -0.1
4,833,072 - -0.0
4,833,072 - +0.2
4,833,072 - -0.3
4,833,072 - +0.3
4,833,072 - +0.3
4,833,072 - -0.6
4,833,072 - +0.6
4,833,072 - +1.3
4,833,072 - +0.3
4,833,090 + +1.5
4,833,090 + -0.4
4,833,090 + +0.5
4,833,091 - -0.5
4,833,091 - +0.3
4,833,091 - +0.3
4,833,118 + +0.7
4,833,137 + +0.4
4,833,137 + -1.1
4,833,137 + -0.0
4,833,137 + -0.4
4,833,138 - +0.8
4,833,170 + -1.7
4,833,173 - +0.2
4,833,173 - +0.7
4,833,187 + -0.6
4,833,278 + -1.3
4,833,302 + IAI46_22700 0.11 +0.1
4,833,302 + IAI46_22700 0.11 +0.7
4,833,302 + IAI46_22700 0.11 +0.5
4,833,303 - IAI46_22700 0.11 -0.1
4,833,303 - IAI46_22700 0.11 +0.8
4,833,303 - IAI46_22700 0.11 +1.1
4,833,387 + IAI46_22700 0.17 -0.3
4,833,400 - IAI46_22700 0.18 +0.7
4,833,429 + IAI46_22700 0.20 +0.7
4,833,451 + IAI46_22700 0.21 -0.5
4,833,451 + IAI46_22700 0.21 -0.5
4,833,452 - IAI46_22700 0.21 +1.0
4,833,458 - IAI46_22700 0.22 -0.6
4,833,458 - IAI46_22700 0.22 +0.4
4,833,458 - IAI46_22700 0.22 +0.3
4,833,458 - IAI46_22700 0.22 +0.2
4,833,498 + IAI46_22700 0.25 +0.1
4,833,576 + IAI46_22700 0.30 +0.9
4,833,576 + IAI46_22700 0.30 +0.5
4,833,577 - IAI46_22700 0.30 +0.8
4,833,577 - IAI46_22700 0.30 -0.5
4,833,577 - IAI46_22700 0.30 +0.9
4,833,577 - IAI46_22700 0.30 +0.5
4,833,735 - IAI46_22700 0.41 -0.0
4,833,778 + IAI46_22700 0.44 +1.4
4,833,779 - IAI46_22700 0.44 +0.5
4,833,797 + IAI46_22700 0.45 +0.3
4,833,797 + IAI46_22700 0.45 -1.2
4,833,797 + IAI46_22700 0.45 +0.1
4,833,827 + IAI46_22700 0.47 -0.0
4,833,827 + IAI46_22700 0.47 +0.1
4,833,828 - IAI46_22700 0.47 -0.3
4,833,861 - IAI46_22700 0.49 -0.2
4,833,861 - IAI46_22700 0.49 -0.9
4,833,870 + IAI46_22700 0.50 +0.9
4,833,979 + IAI46_22700 0.57 -0.4
4,833,980 - IAI46_22700 0.57 +0.0
4,833,987 - IAI46_22700 0.58 +1.3

Or see this region's nucleotide sequence