Strain Fitness in Serratia liquefaciens MT49 around IAI46_22035

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22030 and IAI46_22035 are separated by 206 nucleotidesIAI46_22035 and IAI46_22040 are separated by 66 nucleotides IAI46_22030: IAI46_22030 - 4,5-DOPA dioxygenase extradiol, at 4,689,688 to 4,690,470 _22030 IAI46_22035: IAI46_22035 - zinc transporter ZupT, at 4,690,677 to 4,691,444 _22035 IAI46_22040: IAI46_22040 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 4,691,511 to 4,692,164 _22040 Position (kb) 4690 4691 4692Strain fitness (log2 ratio) -2 -1 0 1 2at 4689.711 kb on + strandat 4689.711 kb on + strandat 4689.712 kb on - strandat 4689.712 kb on - strandat 4689.712 kb on - strandat 4689.712 kb on - strandat 4689.781 kb on + strand, within IAI46_22030at 4689.782 kb on - strand, within IAI46_22030at 4689.782 kb on - strand, within IAI46_22030at 4689.785 kb on + strand, within IAI46_22030at 4689.786 kb on - strand, within IAI46_22030at 4689.786 kb on - strand, within IAI46_22030at 4689.786 kb on - strand, within IAI46_22030at 4689.788 kb on - strand, within IAI46_22030at 4689.819 kb on + strand, within IAI46_22030at 4689.952 kb on + strand, within IAI46_22030at 4689.953 kb on - strand, within IAI46_22030at 4690.041 kb on - strand, within IAI46_22030at 4690.041 kb on - strand, within IAI46_22030at 4690.046 kb on + strand, within IAI46_22030at 4690.046 kb on + strand, within IAI46_22030at 4690.047 kb on - strand, within IAI46_22030at 4690.106 kb on + strand, within IAI46_22030at 4690.113 kb on + strand, within IAI46_22030at 4690.113 kb on + strand, within IAI46_22030at 4690.114 kb on - strand, within IAI46_22030at 4690.173 kb on + strand, within IAI46_22030at 4690.174 kb on - strand, within IAI46_22030at 4690.322 kb on + strand, within IAI46_22030at 4690.323 kb on - strand, within IAI46_22030at 4690.395 kb on + strandat 4690.455 kb on + strandat 4690.455 kb on + strandat 4690.455 kb on + strandat 4690.456 kb on - strandat 4690.470 kb on + strandat 4690.471 kb on - strandat 4690.507 kb on + strandat 4690.508 kb on - strandat 4690.512 kb on + strandat 4690.512 kb on + strandat 4690.513 kb on - strandat 4690.624 kb on - strandat 4690.624 kb on - strandat 4690.631 kb on + strandat 4690.632 kb on - strandat 4690.663 kb on - strandat 4690.664 kb on + strandat 4690.664 kb on + strandat 4690.665 kb on - strandat 4690.805 kb on + strand, within IAI46_22035at 4690.805 kb on + strand, within IAI46_22035at 4690.806 kb on - strand, within IAI46_22035at 4690.909 kb on - strand, within IAI46_22035at 4691.109 kb on - strand, within IAI46_22035at 4691.117 kb on + strand, within IAI46_22035at 4691.151 kb on + strand, within IAI46_22035at 4691.196 kb on - strand, within IAI46_22035at 4691.196 kb on - strand, within IAI46_22035at 4691.196 kb on - strand, within IAI46_22035at 4691.196 kb on - strand, within IAI46_22035at 4691.227 kb on + strand, within IAI46_22035at 4691.227 kb on + strand, within IAI46_22035at 4691.228 kb on - strand, within IAI46_22035at 4691.269 kb on + strand, within IAI46_22035at 4691.282 kb on + strand, within IAI46_22035at 4691.283 kb on - strand, within IAI46_22035at 4691.347 kb on - strand, within IAI46_22035at 4691.364 kb on - strand, within IAI46_22035at 4691.364 kb on - strand, within IAI46_22035at 4691.373 kb on + strandat 4691.437 kb on + strandat 4691.437 kb on + strandat 4691.438 kb on - strandat 4691.438 kb on - strandat 4691.473 kb on + strandat 4691.473 kb on + strandat 4692.223 kb on - strandat 4692.227 kb on - strandat 4692.227 kb on - strandat 4692.233 kb on - strandat 4692.233 kb on - strandat 4692.298 kb on - strandat 4692.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,689,711 + -0.8
4,689,711 + -1.1
4,689,712 - -0.1
4,689,712 - +0.6
4,689,712 - -0.2
4,689,712 - +0.1
4,689,781 + IAI46_22030 0.12 +1.4
4,689,782 - IAI46_22030 0.12 +0.1
4,689,782 - IAI46_22030 0.12 +0.2
4,689,785 + IAI46_22030 0.12 +0.1
4,689,786 - IAI46_22030 0.13 +0.8
4,689,786 - IAI46_22030 0.13 -1.0
4,689,786 - IAI46_22030 0.13 +1.9
4,689,788 - IAI46_22030 0.13 +0.1
4,689,819 + IAI46_22030 0.17 +1.6
4,689,952 + IAI46_22030 0.34 +0.4
4,689,953 - IAI46_22030 0.34 -0.0
4,690,041 - IAI46_22030 0.45 -1.5
4,690,041 - IAI46_22030 0.45 -1.6
4,690,046 + IAI46_22030 0.46 +0.3
4,690,046 + IAI46_22030 0.46 +0.5
4,690,047 - IAI46_22030 0.46 -0.8
4,690,106 + IAI46_22030 0.53 -2.1
4,690,113 + IAI46_22030 0.54 -0.5
4,690,113 + IAI46_22030 0.54 -0.4
4,690,114 - IAI46_22030 0.54 +0.6
4,690,173 + IAI46_22030 0.62 -0.3
4,690,174 - IAI46_22030 0.62 -1.2
4,690,322 + IAI46_22030 0.81 +0.3
4,690,323 - IAI46_22030 0.81 +0.3
4,690,395 + -0.1
4,690,455 + +0.2
4,690,455 + -0.4
4,690,455 + -0.1
4,690,456 - -0.2
4,690,470 + +0.7
4,690,471 - +0.3
4,690,507 + -0.1
4,690,508 - +0.1
4,690,512 + -1.1
4,690,512 + +0.2
4,690,513 - -0.3
4,690,624 - +0.3
4,690,624 - +0.9
4,690,631 + +0.1
4,690,632 - +0.1
4,690,663 - -0.3
4,690,664 + +0.4
4,690,664 + -0.5
4,690,665 - +0.2
4,690,805 + IAI46_22035 0.17 -0.0
4,690,805 + IAI46_22035 0.17 +0.4
4,690,806 - IAI46_22035 0.17 -0.8
4,690,909 - IAI46_22035 0.30 -0.3
4,691,109 - IAI46_22035 0.56 +0.6
4,691,117 + IAI46_22035 0.57 +0.8
4,691,151 + IAI46_22035 0.62 +0.4
4,691,196 - IAI46_22035 0.68 +1.1
4,691,196 - IAI46_22035 0.68 +0.2
4,691,196 - IAI46_22035 0.68 -0.3
4,691,196 - IAI46_22035 0.68 -0.1
4,691,227 + IAI46_22035 0.72 -0.8
4,691,227 + IAI46_22035 0.72 -0.1
4,691,228 - IAI46_22035 0.72 +0.6
4,691,269 + IAI46_22035 0.77 +0.0
4,691,282 + IAI46_22035 0.79 +0.7
4,691,283 - IAI46_22035 0.79 -0.3
4,691,347 - IAI46_22035 0.87 -0.6
4,691,364 - IAI46_22035 0.89 +0.3
4,691,364 - IAI46_22035 0.89 +0.7
4,691,373 + -0.2
4,691,437 + +0.0
4,691,437 + -0.6
4,691,438 - +0.1
4,691,438 - -0.6
4,691,473 + -0.9
4,691,473 + -1.4
4,692,223 - +0.3
4,692,227 - +1.6
4,692,227 - +0.5
4,692,233 - +0.3
4,692,233 - +0.7
4,692,298 - +1.0
4,692,386 - +0.6

Or see this region's nucleotide sequence