Strain Fitness in Serratia liquefaciens MT49 around IAI46_21495

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21485 and IAI46_21490 are separated by 372 nucleotidesIAI46_21490 and IAI46_21495 are separated by 322 nucleotidesIAI46_21495 and IAI46_21500 are separated by 184 nucleotides IAI46_21485: IAI46_21485 - tRNA-Phe, at 4,553,332 to 4,553,407 _21485 IAI46_21490: IAI46_21490 - cysteine desulfurase-like protein, at 4,553,780 to 4,554,000 _21490 IAI46_21495: IAI46_21495 - hypothetical protein, at 4,554,323 to 4,554,622 _21495 IAI46_21500: IAI46_21500 - hypothetical protein, at 4,554,807 to 4,555,673 _21500 Position (kb) 4554 4555Strain fitness (log2 ratio) -2 -1 0 1 2at 4553.567 kb on - strandat 4553.567 kb on - strandat 4553.571 kb on - strandat 4553.571 kb on - strandat 4553.571 kb on - strandat 4553.742 kb on + strandat 4553.819 kb on - strand, within IAI46_21490at 4553.819 kb on - strand, within IAI46_21490at 4553.819 kb on - strand, within IAI46_21490at 4553.883 kb on - strand, within IAI46_21490at 4553.883 kb on - strand, within IAI46_21490at 4553.930 kb on + strand, within IAI46_21490at 4553.930 kb on + strand, within IAI46_21490at 4553.931 kb on - strand, within IAI46_21490at 4553.931 kb on - strand, within IAI46_21490at 4553.950 kb on + strand, within IAI46_21490at 4553.950 kb on + strand, within IAI46_21490at 4553.950 kb on + strand, within IAI46_21490at 4553.951 kb on - strand, within IAI46_21490at 4553.951 kb on - strand, within IAI46_21490at 4553.951 kb on - strand, within IAI46_21490at 4553.951 kb on - strand, within IAI46_21490at 4553.951 kb on - strand, within IAI46_21490at 4554.046 kb on - strandat 4554.046 kb on - strandat 4554.075 kb on - strandat 4554.077 kb on - strandat 4554.080 kb on + strandat 4554.080 kb on + strandat 4554.081 kb on - strandat 4554.081 kb on - strandat 4554.093 kb on + strandat 4554.105 kb on - strandat 4554.393 kb on + strand, within IAI46_21495at 4554.454 kb on + strand, within IAI46_21495at 4554.478 kb on - strand, within IAI46_21495at 4554.604 kb on + strandat 4554.604 kb on + strandat 4554.607 kb on + strandat 4554.607 kb on + strandat 4554.608 kb on - strandat 4554.634 kb on + strandat 4554.635 kb on - strandat 4554.670 kb on - strandat 4554.760 kb on + strandat 4554.825 kb on + strandat 4554.825 kb on + strandat 4554.842 kb on + strandat 4554.871 kb on - strandat 4554.874 kb on - strandat 4554.876 kb on - strandat 4554.913 kb on + strand, within IAI46_21500at 4555.356 kb on + strand, within IAI46_21500at 4555.385 kb on + strand, within IAI46_21500at 4555.388 kb on - strand, within IAI46_21500at 4555.388 kb on - strand, within IAI46_21500at 4555.388 kb on - strand, within IAI46_21500at 4555.402 kb on - strand, within IAI46_21500at 4555.404 kb on - strand, within IAI46_21500at 4555.440 kb on + strand, within IAI46_21500at 4555.440 kb on + strand, within IAI46_21500at 4555.440 kb on + strand, within IAI46_21500at 4555.440 kb on + strand, within IAI46_21500at 4555.441 kb on - strand, within IAI46_21500at 4555.441 kb on - strand, within IAI46_21500at 4555.441 kb on - strand, within IAI46_21500at 4555.441 kb on - strand, within IAI46_21500at 4555.445 kb on + strand, within IAI46_21500at 4555.469 kb on + strand, within IAI46_21500at 4555.503 kb on - strand, within IAI46_21500at 4555.509 kb on - strand, within IAI46_21500

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,553,567 - -0.3
4,553,567 - -2.7
4,553,571 - -1.4
4,553,571 - -0.2
4,553,571 - +0.5
4,553,742 + -0.7
4,553,819 - IAI46_21490 0.18 +0.0
4,553,819 - IAI46_21490 0.18 +0.5
4,553,819 - IAI46_21490 0.18 -0.3
4,553,883 - IAI46_21490 0.47 -0.3
4,553,883 - IAI46_21490 0.47 -0.3
4,553,930 + IAI46_21490 0.68 +0.4
4,553,930 + IAI46_21490 0.68 +0.5
4,553,931 - IAI46_21490 0.68 +0.0
4,553,931 - IAI46_21490 0.68 -0.2
4,553,950 + IAI46_21490 0.77 +0.6
4,553,950 + IAI46_21490 0.77 -0.4
4,553,950 + IAI46_21490 0.77 -1.8
4,553,951 - IAI46_21490 0.77 +0.9
4,553,951 - IAI46_21490 0.77 +0.4
4,553,951 - IAI46_21490 0.77 +0.4
4,553,951 - IAI46_21490 0.77 +0.5
4,553,951 - IAI46_21490 0.77 -1.3
4,554,046 - +0.3
4,554,046 - +1.3
4,554,075 - -0.2
4,554,077 - +0.2
4,554,080 + +0.2
4,554,080 + +0.4
4,554,081 - -0.9
4,554,081 - +0.1
4,554,093 + +0.3
4,554,105 - -0.8
4,554,393 + IAI46_21495 0.23 +0.7
4,554,454 + IAI46_21495 0.44 -1.0
4,554,478 - IAI46_21495 0.52 +0.2
4,554,604 + +0.6
4,554,604 + -0.1
4,554,607 + +1.5
4,554,607 + -0.2
4,554,608 - -0.2
4,554,634 + +1.6
4,554,635 - +0.2
4,554,670 - +0.5
4,554,760 + +1.3
4,554,825 + +0.2
4,554,825 + -0.7
4,554,842 + +0.5
4,554,871 - +0.0
4,554,874 - +0.5
4,554,876 - +0.3
4,554,913 + IAI46_21500 0.12 -0.3
4,555,356 + IAI46_21500 0.63 +0.6
4,555,385 + IAI46_21500 0.67 +0.1
4,555,388 - IAI46_21500 0.67 +0.8
4,555,388 - IAI46_21500 0.67 -0.8
4,555,388 - IAI46_21500 0.67 +0.9
4,555,402 - IAI46_21500 0.69 +1.9
4,555,404 - IAI46_21500 0.69 +0.2
4,555,440 + IAI46_21500 0.73 -0.4
4,555,440 + IAI46_21500 0.73 +0.6
4,555,440 + IAI46_21500 0.73 +0.5
4,555,440 + IAI46_21500 0.73 +0.5
4,555,441 - IAI46_21500 0.73 +1.0
4,555,441 - IAI46_21500 0.73 +0.2
4,555,441 - IAI46_21500 0.73 +1.6
4,555,441 - IAI46_21500 0.73 -0.8
4,555,445 + IAI46_21500 0.74 +0.3
4,555,469 + IAI46_21500 0.76 -0.3
4,555,503 - IAI46_21500 0.80 -0.7
4,555,509 - IAI46_21500 0.81 +1.3

Or see this region's nucleotide sequence