Strain Fitness in Serratia liquefaciens MT49 around IAI46_20850

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20845 and IAI46_20850 are separated by 240 nucleotidesIAI46_20850 and IAI46_20855 are separated by 86 nucleotidesIAI46_20855 and IAI46_20860 are separated by 44 nucleotides IAI46_20845: IAI46_20845 - autotransporter outer membrane beta-barrel domain-containing protein, at 4,408,614 to 4,411,898 _20845 IAI46_20850: IAI46_20850 - aminomethyl-transferring glycine dehydrogenase, at 4,412,139 to 4,415,018 _20850 IAI46_20855: IAI46_20855 - glycine cleavage system protein GcvH, at 4,415,105 to 4,415,491 _20855 IAI46_20860: IAI46_20860 - glycine cleavage system aminomethyltransferase GcvT, at 4,415,536 to 4,416,633 _20860 Position (kb) 4412 4413 4414 4415 4416Strain fitness (log2 ratio) -2 -1 0 1 2at 4411.210 kb on - strand, within IAI46_20845at 4411.247 kb on + strand, within IAI46_20845at 4411.247 kb on + strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.250 kb on + strand, within IAI46_20845at 4411.250 kb on + strand, within IAI46_20845at 4411.250 kb on + strand, within IAI46_20845at 4411.251 kb on - strand, within IAI46_20845at 4411.251 kb on - strand, within IAI46_20845at 4411.377 kb on + strand, within IAI46_20845at 4411.378 kb on - strand, within IAI46_20845at 4411.389 kb on + strand, within IAI46_20845at 4411.389 kb on + strand, within IAI46_20845at 4411.390 kb on - strand, within IAI46_20845at 4411.632 kb on + strandat 4411.633 kb on - strandat 4411.664 kb on + strandat 4411.664 kb on + strandat 4411.664 kb on + strandat 4411.664 kb on + strandat 4411.665 kb on - strandat 4411.668 kb on - strandat 4411.762 kb on + strandat 4411.831 kb on + strandat 4411.831 kb on + strandat 4411.831 kb on + strandat 4411.864 kb on - strandat 4411.917 kb on - strandat 4412.052 kb on + strandat 4412.134 kb on + strandat 4412.141 kb on - strandat 4412.146 kb on + strandat 4412.181 kb on - strandat 4412.224 kb on + strandat 4412.224 kb on + strandat 4412.239 kb on - strandat 4412.275 kb on + strandat 4412.337 kb on - strandat 4412.573 kb on + strand, within IAI46_20850at 4412.574 kb on - strand, within IAI46_20850at 4412.607 kb on - strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.609 kb on - strand, within IAI46_20850at 4412.609 kb on - strand, within IAI46_20850at 4412.621 kb on - strand, within IAI46_20850at 4412.645 kb on + strand, within IAI46_20850at 4412.647 kb on + strand, within IAI46_20850at 4412.647 kb on + strand, within IAI46_20850at 4412.647 kb on + strand, within IAI46_20850at 4412.648 kb on - strand, within IAI46_20850at 4412.658 kb on - strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.735 kb on + strand, within IAI46_20850at 4412.736 kb on - strand, within IAI46_20850at 4412.785 kb on - strand, within IAI46_20850at 4412.785 kb on - strand, within IAI46_20850at 4412.885 kb on + strand, within IAI46_20850at 4412.885 kb on + strand, within IAI46_20850at 4412.897 kb on + strand, within IAI46_20850at 4412.898 kb on - strand, within IAI46_20850at 4412.898 kb on - strand, within IAI46_20850at 4412.898 kb on - strand, within IAI46_20850at 4412.932 kb on + strand, within IAI46_20850at 4412.933 kb on - strand, within IAI46_20850at 4412.966 kb on + strand, within IAI46_20850at 4412.967 kb on - strand, within IAI46_20850at 4413.041 kb on - strand, within IAI46_20850at 4413.230 kb on + strand, within IAI46_20850at 4413.231 kb on - strand, within IAI46_20850at 4413.263 kb on - strand, within IAI46_20850at 4413.263 kb on - strand, within IAI46_20850at 4413.289 kb on + strand, within IAI46_20850at 4413.290 kb on - strand, within IAI46_20850at 4413.545 kb on + strand, within IAI46_20850at 4413.545 kb on + strand, within IAI46_20850at 4413.545 kb on + strand, within IAI46_20850at 4413.546 kb on - strand, within IAI46_20850at 4413.546 kb on - strand, within IAI46_20850at 4413.546 kb on - strand, within IAI46_20850at 4413.546 kb on - strand, within IAI46_20850at 4413.546 kb on - strand, within IAI46_20850at 4413.547 kb on + strand, within IAI46_20850at 4413.548 kb on - strand, within IAI46_20850at 4413.548 kb on - strand, within IAI46_20850at 4413.581 kb on + strand, within IAI46_20850at 4413.582 kb on - strand, within IAI46_20850at 4413.753 kb on - strand, within IAI46_20850at 4413.841 kb on - strand, within IAI46_20850at 4413.967 kb on + strand, within IAI46_20850at 4413.967 kb on + strand, within IAI46_20850at 4413.968 kb on - strand, within IAI46_20850at 4413.968 kb on - strand, within IAI46_20850at 4413.976 kb on + strand, within IAI46_20850at 4413.987 kb on + strand, within IAI46_20850at 4413.987 kb on + strand, within IAI46_20850at 4413.988 kb on - strand, within IAI46_20850at 4413.988 kb on - strand, within IAI46_20850at 4414.014 kb on - strand, within IAI46_20850at 4414.020 kb on - strand, within IAI46_20850at 4414.046 kb on + strand, within IAI46_20850at 4414.271 kb on + strand, within IAI46_20850at 4414.272 kb on - strand, within IAI46_20850at 4414.272 kb on - strand, within IAI46_20850at 4414.334 kb on - strand, within IAI46_20850at 4414.334 kb on - strand, within IAI46_20850at 4414.482 kb on + strand, within IAI46_20850at 4414.482 kb on + strand, within IAI46_20850at 4414.482 kb on + strand, within IAI46_20850at 4414.482 kb on + strand, within IAI46_20850at 4414.483 kb on - strand, within IAI46_20850at 4414.483 kb on - strand, within IAI46_20850at 4414.483 kb on - strand, within IAI46_20850at 4414.483 kb on - strand, within IAI46_20850at 4414.662 kb on + strand, within IAI46_20850at 4414.675 kb on + strand, within IAI46_20850at 4414.684 kb on + strand, within IAI46_20850at 4414.684 kb on + strand, within IAI46_20850at 4414.684 kb on + strand, within IAI46_20850at 4414.684 kb on + strand, within IAI46_20850at 4414.684 kb on + strand, within IAI46_20850at 4414.684 kb on + strand, within IAI46_20850at 4414.685 kb on - strand, within IAI46_20850at 4414.685 kb on - strand, within IAI46_20850at 4414.685 kb on - strand, within IAI46_20850at 4414.693 kb on + strand, within IAI46_20850at 4414.693 kb on + strand, within IAI46_20850at 4414.754 kb on - strandat 4414.768 kb on + strandat 4414.768 kb on + strandat 4414.778 kb on - strandat 4415.056 kb on + strandat 4415.056 kb on + strandat 4415.056 kb on + strandat 4415.066 kb on + strandat 4415.067 kb on - strandat 4415.106 kb on + strandat 4415.106 kb on + strandat 4415.127 kb on + strandat 4415.127 kb on + strandat 4415.127 kb on + strandat 4415.128 kb on - strandat 4415.177 kb on - strand, within IAI46_20855at 4415.203 kb on - strand, within IAI46_20855at 4415.281 kb on - strand, within IAI46_20855at 4415.411 kb on + strand, within IAI46_20855at 4415.411 kb on + strand, within IAI46_20855at 4415.411 kb on + strand, within IAI46_20855at 4415.412 kb on - strand, within IAI46_20855at 4415.464 kb on - strandat 4415.464 kb on - strandat 4415.464 kb on - strandat 4415.499 kb on + strandat 4415.499 kb on + strandat 4415.515 kb on + strandat 4415.553 kb on + strandat 4415.754 kb on + strand, within IAI46_20860at 4415.754 kb on + strand, within IAI46_20860at 4415.755 kb on - strand, within IAI46_20860at 4415.755 kb on - strand, within IAI46_20860at 4415.758 kb on + strand, within IAI46_20860at 4415.759 kb on - strand, within IAI46_20860at 4415.759 kb on - strand, within IAI46_20860at 4415.759 kb on - strand, within IAI46_20860at 4415.759 kb on - strand, within IAI46_20860at 4415.759 kb on - strand, within IAI46_20860at 4415.759 kb on - strand, within IAI46_20860at 4415.761 kb on + strand, within IAI46_20860at 4415.762 kb on - strand, within IAI46_20860at 4415.927 kb on + strand, within IAI46_20860at 4415.927 kb on + strand, within IAI46_20860at 4415.928 kb on - strand, within IAI46_20860

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,411,210 - IAI46_20845 0.79 -1.0
4,411,247 + IAI46_20845 0.80 +1.0
4,411,247 + IAI46_20845 0.80 -0.1
4,411,248 - IAI46_20845 0.80 -0.6
4,411,248 - IAI46_20845 0.80 +0.3
4,411,248 - IAI46_20845 0.80 -0.9
4,411,248 - IAI46_20845 0.80 +0.3
4,411,250 + IAI46_20845 0.80 +0.2
4,411,250 + IAI46_20845 0.80 +0.4
4,411,250 + IAI46_20845 0.80 +0.5
4,411,251 - IAI46_20845 0.80 +0.0
4,411,251 - IAI46_20845 0.80 +0.4
4,411,377 + IAI46_20845 0.84 -0.3
4,411,378 - IAI46_20845 0.84 +0.3
4,411,389 + IAI46_20845 0.84 +0.2
4,411,389 + IAI46_20845 0.84 -2.1
4,411,390 - IAI46_20845 0.85 +0.6
4,411,632 + +0.2
4,411,633 - +0.3
4,411,664 + +0.7
4,411,664 + +0.5
4,411,664 + +1.4
4,411,664 + +0.8
4,411,665 - +0.2
4,411,668 - -0.4
4,411,762 + +0.5
4,411,831 + -1.3
4,411,831 + +0.4
4,411,831 + +0.3
4,411,864 - -0.4
4,411,917 - -0.9
4,412,052 + +0.2
4,412,134 + +0.2
4,412,141 - +0.9
4,412,146 + -0.6
4,412,181 - +0.1
4,412,224 + -0.4
4,412,224 + -0.0
4,412,239 - -0.1
4,412,275 + -0.4
4,412,337 - +0.4
4,412,573 + IAI46_20850 0.15 +0.5
4,412,574 - IAI46_20850 0.15 +1.0
4,412,607 - IAI46_20850 0.16 +1.1
4,412,608 + IAI46_20850 0.16 -0.9
4,412,608 + IAI46_20850 0.16 +0.1
4,412,608 + IAI46_20850 0.16 +0.1
4,412,608 + IAI46_20850 0.16 +0.8
4,412,609 - IAI46_20850 0.16 +0.5
4,412,609 - IAI46_20850 0.16 -1.9
4,412,621 - IAI46_20850 0.17 -0.6
4,412,645 + IAI46_20850 0.18 +0.7
4,412,647 + IAI46_20850 0.18 -0.3
4,412,647 + IAI46_20850 0.18 +0.7
4,412,647 + IAI46_20850 0.18 -1.6
4,412,648 - IAI46_20850 0.18 +0.4
4,412,658 - IAI46_20850 0.18 +0.2
4,412,713 + IAI46_20850 0.20 +0.4
4,412,713 + IAI46_20850 0.20 +0.2
4,412,713 + IAI46_20850 0.20 -0.0
4,412,713 + IAI46_20850 0.20 +1.0
4,412,713 + IAI46_20850 0.20 +0.2
4,412,713 + IAI46_20850 0.20 +1.0
4,412,713 + IAI46_20850 0.20 -0.6
4,412,713 + IAI46_20850 0.20 +0.2
4,412,714 - IAI46_20850 0.20 -0.1
4,412,714 - IAI46_20850 0.20 +1.4
4,412,714 - IAI46_20850 0.20 -1.0
4,412,714 - IAI46_20850 0.20 +0.6
4,412,714 - IAI46_20850 0.20 -0.2
4,412,714 - IAI46_20850 0.20 +1.6
4,412,735 + IAI46_20850 0.21 +0.6
4,412,736 - IAI46_20850 0.21 -0.4
4,412,785 - IAI46_20850 0.22 -0.4
4,412,785 - IAI46_20850 0.22 +0.1
4,412,885 + IAI46_20850 0.26 -0.2
4,412,885 + IAI46_20850 0.26 +1.2
4,412,897 + IAI46_20850 0.26 +0.0
4,412,898 - IAI46_20850 0.26 -0.5
4,412,898 - IAI46_20850 0.26 -0.8
4,412,898 - IAI46_20850 0.26 +0.8
4,412,932 + IAI46_20850 0.28 +0.2
4,412,933 - IAI46_20850 0.28 -0.7
4,412,966 + IAI46_20850 0.29 +0.1
4,412,967 - IAI46_20850 0.29 +0.4
4,413,041 - IAI46_20850 0.31 -0.0
4,413,230 + IAI46_20850 0.38 +0.2
4,413,231 - IAI46_20850 0.38 +0.9
4,413,263 - IAI46_20850 0.39 -0.7
4,413,263 - IAI46_20850 0.39 +0.3
4,413,289 + IAI46_20850 0.40 -1.7
4,413,290 - IAI46_20850 0.40 +0.1
4,413,545 + IAI46_20850 0.49 +0.3
4,413,545 + IAI46_20850 0.49 +0.3
4,413,545 + IAI46_20850 0.49 +0.1
4,413,546 - IAI46_20850 0.49 -0.3
4,413,546 - IAI46_20850 0.49 -1.8
4,413,546 - IAI46_20850 0.49 +0.1
4,413,546 - IAI46_20850 0.49 +0.0
4,413,546 - IAI46_20850 0.49 +0.3
4,413,547 + IAI46_20850 0.49 +1.0
4,413,548 - IAI46_20850 0.49 +0.8
4,413,548 - IAI46_20850 0.49 +0.8
4,413,581 + IAI46_20850 0.50 -2.5
4,413,582 - IAI46_20850 0.50 -0.8
4,413,753 - IAI46_20850 0.56 -0.5
4,413,841 - IAI46_20850 0.59 +0.2
4,413,967 + IAI46_20850 0.63 +0.4
4,413,967 + IAI46_20850 0.63 -0.0
4,413,968 - IAI46_20850 0.64 +0.8
4,413,968 - IAI46_20850 0.64 +1.1
4,413,976 + IAI46_20850 0.64 -0.4
4,413,987 + IAI46_20850 0.64 -0.3
4,413,987 + IAI46_20850 0.64 -0.1
4,413,988 - IAI46_20850 0.64 -0.3
4,413,988 - IAI46_20850 0.64 +2.7
4,414,014 - IAI46_20850 0.65 +0.3
4,414,020 - IAI46_20850 0.65 -0.3
4,414,046 + IAI46_20850 0.66 -0.4
4,414,271 + IAI46_20850 0.74 +0.2
4,414,272 - IAI46_20850 0.74 -1.2
4,414,272 - IAI46_20850 0.74 +0.5
4,414,334 - IAI46_20850 0.76 +0.0
4,414,334 - IAI46_20850 0.76 +0.7
4,414,482 + IAI46_20850 0.81 -0.7
4,414,482 + IAI46_20850 0.81 -0.2
4,414,482 + IAI46_20850 0.81 +0.1
4,414,482 + IAI46_20850 0.81 +0.4
4,414,483 - IAI46_20850 0.81 -0.1
4,414,483 - IAI46_20850 0.81 -0.6
4,414,483 - IAI46_20850 0.81 -0.4
4,414,483 - IAI46_20850 0.81 +0.1
4,414,662 + IAI46_20850 0.88 +1.0
4,414,675 + IAI46_20850 0.88 +0.7
4,414,684 + IAI46_20850 0.88 +0.7
4,414,684 + IAI46_20850 0.88 +0.6
4,414,684 + IAI46_20850 0.88 -0.3
4,414,684 + IAI46_20850 0.88 -0.1
4,414,684 + IAI46_20850 0.88 -0.3
4,414,684 + IAI46_20850 0.88 -0.4
4,414,685 - IAI46_20850 0.88 -0.4
4,414,685 - IAI46_20850 0.88 -0.2
4,414,685 - IAI46_20850 0.88 +0.7
4,414,693 + IAI46_20850 0.89 -0.2
4,414,693 + IAI46_20850 0.89 +0.6
4,414,754 - -0.6
4,414,768 + +0.8
4,414,768 + -0.1
4,414,778 - +0.1
4,415,056 + +0.5
4,415,056 + +0.2
4,415,056 + +0.7
4,415,066 + -0.0
4,415,067 - +0.4
4,415,106 + -0.4
4,415,106 + -0.3
4,415,127 + +0.2
4,415,127 + -0.9
4,415,127 + +0.2
4,415,128 - +0.2
4,415,177 - IAI46_20855 0.19 +0.4
4,415,203 - IAI46_20855 0.25 +0.4
4,415,281 - IAI46_20855 0.45 +0.4
4,415,411 + IAI46_20855 0.79 -0.7
4,415,411 + IAI46_20855 0.79 -0.4
4,415,411 + IAI46_20855 0.79 -1.5
4,415,412 - IAI46_20855 0.79 +0.4
4,415,464 - +0.2
4,415,464 - +0.4
4,415,464 - -0.8
4,415,499 + +0.7
4,415,499 + +0.7
4,415,515 + -0.9
4,415,553 + +0.8
4,415,754 + IAI46_20860 0.20 -0.3
4,415,754 + IAI46_20860 0.20 -0.9
4,415,755 - IAI46_20860 0.20 -0.1
4,415,755 - IAI46_20860 0.20 -0.4
4,415,758 + IAI46_20860 0.20 +0.8
4,415,759 - IAI46_20860 0.20 -0.1
4,415,759 - IAI46_20860 0.20 -1.0
4,415,759 - IAI46_20860 0.20 +0.6
4,415,759 - IAI46_20860 0.20 -0.2
4,415,759 - IAI46_20860 0.20 -0.8
4,415,759 - IAI46_20860 0.20 +0.3
4,415,761 + IAI46_20860 0.20 -0.1
4,415,762 - IAI46_20860 0.21 -1.0
4,415,927 + IAI46_20860 0.36 -0.9
4,415,927 + IAI46_20860 0.36 -1.0
4,415,928 - IAI46_20860 0.36 +1.0

Or see this region's nucleotide sequence