Strain Fitness in Serratia liquefaciens MT49 around IAI46_19830

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19820 and IAI46_19825 are separated by 118 nucleotidesIAI46_19825 and IAI46_19830 are separated by 48 nucleotidesIAI46_19830 and IAI46_19835 are separated by 173 nucleotidesIAI46_19835 and IAI46_19840 are separated by 66 nucleotides IAI46_19820: IAI46_19820 - N-acetyltransferase, at 4,184,028 to 4,184,306 _19820 IAI46_19825: IAI46_19825 - DoxX family protein, at 4,184,425 to 4,184,838 _19825 IAI46_19830: IAI46_19830 - DNA endonuclease SmrA, at 4,184,887 to 4,185,459 _19830 IAI46_19835: IAI46_19835 - MbeD/MobD like protein, at 4,185,633 to 4,185,971 _19835 IAI46_19840: IAI46_19840 - DUF1198 family protein, at 4,186,038 to 4,186,484 _19840 Position (kb) 4184 4185 4186Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4183.925 kb on + strandat 4183.939 kb on - strandat 4183.975 kb on + strandat 4184.037 kb on + strandat 4184.037 kb on + strandat 4184.038 kb on - strandat 4184.038 kb on - strandat 4184.038 kb on - strandat 4184.038 kb on - strandat 4184.038 kb on - strandat 4184.040 kb on - strandat 4184.048 kb on - strandat 4184.155 kb on - strand, within IAI46_19820at 4184.267 kb on + strand, within IAI46_19820at 4184.268 kb on - strand, within IAI46_19820at 4184.269 kb on + strand, within IAI46_19820at 4184.365 kb on - strandat 4184.367 kb on + strandat 4184.367 kb on + strandat 4184.368 kb on - strandat 4184.372 kb on + strandat 4184.373 kb on - strandat 4184.386 kb on + strandat 4184.386 kb on + strandat 4184.396 kb on + strandat 4184.396 kb on + strandat 4184.397 kb on - strandat 4184.493 kb on - strand, within IAI46_19825at 4184.493 kb on - strand, within IAI46_19825at 4184.493 kb on - strand, within IAI46_19825at 4184.548 kb on + strand, within IAI46_19825at 4184.554 kb on - strand, within IAI46_19825at 4184.567 kb on - strand, within IAI46_19825at 4184.567 kb on - strand, within IAI46_19825at 4184.571 kb on - strand, within IAI46_19825at 4184.581 kb on - strand, within IAI46_19825at 4184.631 kb on - strand, within IAI46_19825at 4184.665 kb on + strand, within IAI46_19825at 4184.665 kb on + strand, within IAI46_19825at 4184.665 kb on + strand, within IAI46_19825at 4184.665 kb on + strand, within IAI46_19825at 4184.666 kb on - strand, within IAI46_19825at 4184.666 kb on - strand, within IAI46_19825at 4184.833 kb on - strandat 4184.836 kb on + strandat 4184.837 kb on - strandat 4184.895 kb on + strandat 4184.896 kb on - strandat 4184.896 kb on - strandat 4184.957 kb on + strand, within IAI46_19830at 4184.958 kb on - strand, within IAI46_19830at 4184.958 kb on - strand, within IAI46_19830at 4185.041 kb on + strand, within IAI46_19830at 4185.041 kb on + strand, within IAI46_19830at 4185.042 kb on - strand, within IAI46_19830at 4185.042 kb on - strand, within IAI46_19830at 4185.135 kb on + strand, within IAI46_19830at 4185.259 kb on - strand, within IAI46_19830at 4185.261 kb on - strand, within IAI46_19830at 4185.354 kb on + strand, within IAI46_19830at 4185.380 kb on + strand, within IAI46_19830at 4185.481 kb on + strandat 4185.482 kb on - strandat 4185.482 kb on - strandat 4185.500 kb on + strandat 4185.500 kb on + strandat 4185.512 kb on + strandat 4185.512 kb on + strandat 4185.512 kb on + strandat 4185.591 kb on - strandat 4185.726 kb on + strand, within IAI46_19835at 4185.726 kb on + strand, within IAI46_19835at 4185.727 kb on - strand, within IAI46_19835at 4185.727 kb on - strand, within IAI46_19835at 4185.727 kb on - strand, within IAI46_19835at 4185.759 kb on - strand, within IAI46_19835at 4185.782 kb on + strand, within IAI46_19835at 4185.782 kb on + strand, within IAI46_19835at 4185.783 kb on - strand, within IAI46_19835at 4185.783 kb on - strand, within IAI46_19835at 4186.025 kb on + strandat 4186.026 kb on - strandat 4186.026 kb on - strandat 4186.028 kb on + strandat 4186.028 kb on + strandat 4186.029 kb on - strandat 4186.029 kb on - strandat 4186.072 kb on + strandat 4186.073 kb on - strandat 4186.076 kb on + strandat 4186.080 kb on - strandat 4186.080 kb on - strandat 4186.106 kb on + strand, within IAI46_19840at 4186.154 kb on + strand, within IAI46_19840at 4186.154 kb on + strand, within IAI46_19840at 4186.154 kb on + strand, within IAI46_19840at 4186.155 kb on - strand, within IAI46_19840at 4186.155 kb on - strand, within IAI46_19840at 4186.268 kb on + strand, within IAI46_19840at 4186.268 kb on + strand, within IAI46_19840at 4186.268 kb on + strand, within IAI46_19840at 4186.268 kb on + strand, within IAI46_19840at 4186.268 kb on + strand, within IAI46_19840at 4186.269 kb on - strand, within IAI46_19840at 4186.269 kb on - strand, within IAI46_19840at 4186.269 kb on - strand, within IAI46_19840at 4186.269 kb on - strand, within IAI46_19840at 4186.272 kb on + strand, within IAI46_19840at 4186.273 kb on - strand, within IAI46_19840at 4186.273 kb on - strand, within IAI46_19840at 4186.357 kb on + strand, within IAI46_19840at 4186.357 kb on + strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.358 kb on - strand, within IAI46_19840at 4186.444 kb on - strandat 4186.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,183,925 + -0.4
4,183,939 - -0.2
4,183,975 + +0.3
4,184,037 + -1.8
4,184,037 + -0.3
4,184,038 - -0.1
4,184,038 - +0.5
4,184,038 - -0.6
4,184,038 - -0.3
4,184,038 - +0.8
4,184,040 - +0.3
4,184,048 - -0.7
4,184,155 - IAI46_19820 0.46 -0.5
4,184,267 + IAI46_19820 0.86 +1.2
4,184,268 - IAI46_19820 0.86 -0.1
4,184,269 + IAI46_19820 0.86 +1.2
4,184,365 - -0.4
4,184,367 + +0.8
4,184,367 + +0.9
4,184,368 - -0.4
4,184,372 + -0.1
4,184,373 - +0.4
4,184,386 + -0.8
4,184,386 + -0.2
4,184,396 + -2.0
4,184,396 + +0.3
4,184,397 - -0.4
4,184,493 - IAI46_19825 0.16 -0.3
4,184,493 - IAI46_19825 0.16 +0.7
4,184,493 - IAI46_19825 0.16 +0.5
4,184,548 + IAI46_19825 0.30 +0.2
4,184,554 - IAI46_19825 0.31 -1.0
4,184,567 - IAI46_19825 0.34 -0.1
4,184,567 - IAI46_19825 0.34 -1.0
4,184,571 - IAI46_19825 0.35 -0.4
4,184,581 - IAI46_19825 0.38 +0.1
4,184,631 - IAI46_19825 0.50 -0.4
4,184,665 + IAI46_19825 0.58 -0.1
4,184,665 + IAI46_19825 0.58 -0.2
4,184,665 + IAI46_19825 0.58 -0.1
4,184,665 + IAI46_19825 0.58 +0.1
4,184,666 - IAI46_19825 0.58 +0.2
4,184,666 - IAI46_19825 0.58 -0.5
4,184,833 - +1.5
4,184,836 + -0.5
4,184,837 - -0.6
4,184,895 + -0.0
4,184,896 - +0.6
4,184,896 - -0.2
4,184,957 + IAI46_19830 0.12 +0.2
4,184,958 - IAI46_19830 0.12 -0.6
4,184,958 - IAI46_19830 0.12 +0.3
4,185,041 + IAI46_19830 0.27 +1.2
4,185,041 + IAI46_19830 0.27 +0.6
4,185,042 - IAI46_19830 0.27 +1.1
4,185,042 - IAI46_19830 0.27 -0.2
4,185,135 + IAI46_19830 0.43 -0.9
4,185,259 - IAI46_19830 0.65 -1.8
4,185,261 - IAI46_19830 0.65 -1.3
4,185,354 + IAI46_19830 0.82 -0.0
4,185,380 + IAI46_19830 0.86 +0.6
4,185,481 + +0.8
4,185,482 - -0.4
4,185,482 - +0.8
4,185,500 + +0.9
4,185,500 + -0.5
4,185,512 + -0.9
4,185,512 + -1.4
4,185,512 + -0.7
4,185,591 - +0.6
4,185,726 + IAI46_19835 0.27 +2.2
4,185,726 + IAI46_19835 0.27 +0.3
4,185,727 - IAI46_19835 0.28 -0.8
4,185,727 - IAI46_19835 0.28 +1.3
4,185,727 - IAI46_19835 0.28 +0.8
4,185,759 - IAI46_19835 0.37 -0.5
4,185,782 + IAI46_19835 0.44 +1.4
4,185,782 + IAI46_19835 0.44 +0.8
4,185,783 - IAI46_19835 0.44 +0.5
4,185,783 - IAI46_19835 0.44 +1.4
4,186,025 + +0.9
4,186,026 - -0.1
4,186,026 - -0.1
4,186,028 + +2.4
4,186,028 + +0.3
4,186,029 - -0.0
4,186,029 - +1.1
4,186,072 + -1.5
4,186,073 - +0.3
4,186,076 + -0.5
4,186,080 - -0.1
4,186,080 - +0.2
4,186,106 + IAI46_19840 0.15 -0.0
4,186,154 + IAI46_19840 0.26 -0.3
4,186,154 + IAI46_19840 0.26 +1.2
4,186,154 + IAI46_19840 0.26 -1.1
4,186,155 - IAI46_19840 0.26 +0.0
4,186,155 - IAI46_19840 0.26 +0.7
4,186,268 + IAI46_19840 0.51 +0.3
4,186,268 + IAI46_19840 0.51 +0.7
4,186,268 + IAI46_19840 0.51 +0.7
4,186,268 + IAI46_19840 0.51 +0.8
4,186,268 + IAI46_19840 0.51 -0.1
4,186,269 - IAI46_19840 0.52 +0.4
4,186,269 - IAI46_19840 0.52 +0.5
4,186,269 - IAI46_19840 0.52 +0.3
4,186,269 - IAI46_19840 0.52 +3.3
4,186,272 + IAI46_19840 0.52 +0.8
4,186,273 - IAI46_19840 0.53 -0.3
4,186,273 - IAI46_19840 0.53 +0.3
4,186,357 + IAI46_19840 0.71 +1.1
4,186,357 + IAI46_19840 0.71 +0.8
4,186,358 - IAI46_19840 0.72 +0.6
4,186,358 - IAI46_19840 0.72 -0.8
4,186,358 - IAI46_19840 0.72 -0.1
4,186,358 - IAI46_19840 0.72 +0.4
4,186,358 - IAI46_19840 0.72 +0.3
4,186,358 - IAI46_19840 0.72 +0.8
4,186,358 - IAI46_19840 0.72 -0.3
4,186,444 - -0.6
4,186,444 - -0.4

Or see this region's nucleotide sequence