Strain Fitness in Serratia liquefaciens MT49 around IAI46_19430

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19420 and IAI46_19425 overlap by 11 nucleotidesIAI46_19425 and IAI46_19430 are separated by 1 nucleotidesIAI46_19430 and IAI46_19435 are separated by 194 nucleotides IAI46_19420: IAI46_19420 - ABC transporter permease, at 4,100,018 to 4,100,824 _19420 IAI46_19425: IAI46_19425 - ABC transporter permease, at 4,100,814 to 4,101,758 _19425 IAI46_19430: IAI46_19430 - ABC transporter ATP-binding protein, at 4,101,760 to 4,102,788 _19430 IAI46_19435: IAI46_19435 - ABC transporter substrate-binding protein, at 4,102,983 to 4,104,137 _19435 Position (kb) 4101 4102 4103Strain fitness (log2 ratio) -2 -1 0 1 2at 4100.801 kb on + strandat 4100.802 kb on - strandat 4100.802 kb on - strandat 4100.889 kb on - strandat 4100.889 kb on - strandat 4100.909 kb on + strand, within IAI46_19425at 4100.935 kb on + strand, within IAI46_19425at 4101.176 kb on + strand, within IAI46_19425at 4101.176 kb on + strand, within IAI46_19425at 4101.177 kb on - strand, within IAI46_19425at 4101.179 kb on - strand, within IAI46_19425at 4101.179 kb on - strand, within IAI46_19425at 4101.179 kb on - strand, within IAI46_19425at 4101.179 kb on - strand, within IAI46_19425at 4101.216 kb on + strand, within IAI46_19425at 4101.335 kb on - strand, within IAI46_19425at 4101.347 kb on + strand, within IAI46_19425at 4101.349 kb on + strand, within IAI46_19425at 4101.350 kb on - strand, within IAI46_19425at 4101.350 kb on - strand, within IAI46_19425at 4101.350 kb on - strand, within IAI46_19425at 4101.350 kb on - strand, within IAI46_19425at 4101.350 kb on - strand, within IAI46_19425at 4101.382 kb on + strand, within IAI46_19425at 4101.413 kb on - strand, within IAI46_19425at 4101.424 kb on + strand, within IAI46_19425at 4101.425 kb on - strand, within IAI46_19425at 4101.425 kb on - strand, within IAI46_19425at 4101.425 kb on - strand, within IAI46_19425at 4101.427 kb on + strand, within IAI46_19425at 4101.428 kb on - strand, within IAI46_19425at 4101.428 kb on - strand, within IAI46_19425at 4101.625 kb on + strand, within IAI46_19425at 4101.625 kb on + strand, within IAI46_19425at 4101.660 kb on + strand, within IAI46_19425at 4101.660 kb on + strand, within IAI46_19425at 4101.673 kb on + strandat 4101.674 kb on - strandat 4101.674 kb on - strandat 4101.674 kb on - strandat 4101.698 kb on - strandat 4101.698 kb on - strandat 4101.930 kb on - strand, within IAI46_19430at 4102.074 kb on + strand, within IAI46_19430at 4102.121 kb on + strand, within IAI46_19430at 4102.121 kb on + strand, within IAI46_19430at 4102.122 kb on - strand, within IAI46_19430at 4102.122 kb on - strand, within IAI46_19430at 4102.153 kb on - strand, within IAI46_19430at 4102.408 kb on + strand, within IAI46_19430at 4102.494 kb on - strand, within IAI46_19430at 4102.518 kb on + strand, within IAI46_19430at 4102.518 kb on + strand, within IAI46_19430at 4102.518 kb on + strand, within IAI46_19430at 4102.519 kb on - strand, within IAI46_19430at 4102.519 kb on - strand, within IAI46_19430at 4102.519 kb on - strand, within IAI46_19430at 4102.519 kb on - strand, within IAI46_19430at 4102.519 kb on - strand, within IAI46_19430at 4102.536 kb on - strand, within IAI46_19430at 4102.536 kb on - strand, within IAI46_19430at 4102.569 kb on - strand, within IAI46_19430at 4102.708 kb on + strandat 4102.709 kb on - strandat 4102.841 kb on - strandat 4102.867 kb on - strandat 4102.913 kb on + strandat 4102.914 kb on - strandat 4102.923 kb on - strandat 4102.935 kb on + strandat 4102.971 kb on - strandat 4102.971 kb on - strandat 4102.981 kb on + strandat 4102.981 kb on + strandat 4102.982 kb on - strandat 4102.984 kb on + strandat 4102.984 kb on + strandat 4102.985 kb on - strandat 4103.008 kb on + strandat 4103.008 kb on + strandat 4103.117 kb on + strand, within IAI46_19435at 4103.230 kb on + strand, within IAI46_19435at 4103.307 kb on + strand, within IAI46_19435at 4103.395 kb on + strand, within IAI46_19435at 4103.406 kb on + strand, within IAI46_19435at 4103.477 kb on - strand, within IAI46_19435at 4103.560 kb on + strand, within IAI46_19435at 4103.560 kb on + strand, within IAI46_19435at 4103.560 kb on + strand, within IAI46_19435at 4103.560 kb on + strand, within IAI46_19435at 4103.560 kb on + strand, within IAI46_19435at 4103.561 kb on - strand, within IAI46_19435at 4103.575 kb on + strand, within IAI46_19435at 4103.576 kb on - strand, within IAI46_19435at 4103.634 kb on + strand, within IAI46_19435at 4103.635 kb on - strand, within IAI46_19435at 4103.635 kb on - strand, within IAI46_19435at 4103.675 kb on + strand, within IAI46_19435at 4103.677 kb on + strand, within IAI46_19435at 4103.677 kb on + strand, within IAI46_19435at 4103.677 kb on + strand, within IAI46_19435at 4103.677 kb on + strand, within IAI46_19435at 4103.678 kb on - strand, within IAI46_19435at 4103.716 kb on + strand, within IAI46_19435at 4103.737 kb on + strand, within IAI46_19435at 4103.752 kb on - strand, within IAI46_19435

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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4,100,801 + +0.1
4,100,802 - +0.8
4,100,802 - +1.6
4,100,889 - +0.3
4,100,889 - +0.0
4,100,909 + IAI46_19425 0.10 -0.9
4,100,935 + IAI46_19425 0.13 -0.8
4,101,176 + IAI46_19425 0.38 +0.0
4,101,176 + IAI46_19425 0.38 +0.0
4,101,177 - IAI46_19425 0.38 +0.2
4,101,179 - IAI46_19425 0.39 -0.1
4,101,179 - IAI46_19425 0.39 +0.4
4,101,179 - IAI46_19425 0.39 +0.1
4,101,179 - IAI46_19425 0.39 +0.1
4,101,216 + IAI46_19425 0.43 -0.1
4,101,335 - IAI46_19425 0.55 +0.9
4,101,347 + IAI46_19425 0.56 +0.3
4,101,349 + IAI46_19425 0.57 +0.5
4,101,350 - IAI46_19425 0.57 -0.0
4,101,350 - IAI46_19425 0.57 +0.4
4,101,350 - IAI46_19425 0.57 -0.6
4,101,350 - IAI46_19425 0.57 -1.9
4,101,350 - IAI46_19425 0.57 +0.6
4,101,382 + IAI46_19425 0.60 -0.6
4,101,413 - IAI46_19425 0.63 +0.1
4,101,424 + IAI46_19425 0.65 +0.6
4,101,425 - IAI46_19425 0.65 +0.3
4,101,425 - IAI46_19425 0.65 -0.6
4,101,425 - IAI46_19425 0.65 -0.3
4,101,427 + IAI46_19425 0.65 -0.9
4,101,428 - IAI46_19425 0.65 +0.6
4,101,428 - IAI46_19425 0.65 +0.1
4,101,625 + IAI46_19425 0.86 -0.2
4,101,625 + IAI46_19425 0.86 +0.1
4,101,660 + IAI46_19425 0.90 +2.3
4,101,660 + IAI46_19425 0.90 -0.2
4,101,673 + -0.5
4,101,674 - +0.2
4,101,674 - +0.4
4,101,674 - -0.0
4,101,698 - +0.8
4,101,698 - +0.2
4,101,930 - IAI46_19430 0.17 +0.8
4,102,074 + IAI46_19430 0.31 +0.8
4,102,121 + IAI46_19430 0.35 -0.7
4,102,121 + IAI46_19430 0.35 +0.3
4,102,122 - IAI46_19430 0.35 +0.8
4,102,122 - IAI46_19430 0.35 -0.2
4,102,153 - IAI46_19430 0.38 +1.1
4,102,408 + IAI46_19430 0.63 -0.1
4,102,494 - IAI46_19430 0.71 +0.6
4,102,518 + IAI46_19430 0.74 +1.1
4,102,518 + IAI46_19430 0.74 +0.7
4,102,518 + IAI46_19430 0.74 -0.3
4,102,519 - IAI46_19430 0.74 -0.2
4,102,519 - IAI46_19430 0.74 +0.1
4,102,519 - IAI46_19430 0.74 -0.2
4,102,519 - IAI46_19430 0.74 -0.5
4,102,519 - IAI46_19430 0.74 -0.3
4,102,536 - IAI46_19430 0.75 -1.8
4,102,536 - IAI46_19430 0.75 +0.5
4,102,569 - IAI46_19430 0.79 +0.9
4,102,708 + +1.2
4,102,709 - -0.3
4,102,841 - +1.0
4,102,867 - +0.2
4,102,913 + +0.3
4,102,914 - -0.3
4,102,923 - -1.4
4,102,935 + -0.3
4,102,971 - +0.3
4,102,971 - +0.5
4,102,981 + -0.9
4,102,981 + +0.1
4,102,982 - +0.6
4,102,984 + +0.4
4,102,984 + +1.4
4,102,985 - +0.5
4,103,008 + +0.5
4,103,008 + +1.3
4,103,117 + IAI46_19435 0.12 -0.8
4,103,230 + IAI46_19435 0.21 -0.0
4,103,307 + IAI46_19435 0.28 +0.1
4,103,395 + IAI46_19435 0.36 +1.2
4,103,406 + IAI46_19435 0.37 +1.4
4,103,477 - IAI46_19435 0.43 +2.4
4,103,560 + IAI46_19435 0.50 -0.0
4,103,560 + IAI46_19435 0.50 +0.3
4,103,560 + IAI46_19435 0.50 +0.5
4,103,560 + IAI46_19435 0.50 -0.1
4,103,560 + IAI46_19435 0.50 +0.8
4,103,561 - IAI46_19435 0.50 -0.1
4,103,575 + IAI46_19435 0.51 -0.7
4,103,576 - IAI46_19435 0.51 +0.2
4,103,634 + IAI46_19435 0.56 -0.7
4,103,635 - IAI46_19435 0.56 -2.2
4,103,635 - IAI46_19435 0.56 -0.5
4,103,675 + IAI46_19435 0.60 +0.1
4,103,677 + IAI46_19435 0.60 +0.4
4,103,677 + IAI46_19435 0.60 -1.1
4,103,677 + IAI46_19435 0.60 +0.5
4,103,677 + IAI46_19435 0.60 +1.7
4,103,678 - IAI46_19435 0.60 -0.4
4,103,716 + IAI46_19435 0.63 -0.5
4,103,737 + IAI46_19435 0.65 -0.5
4,103,752 - IAI46_19435 0.67 -0.7

Or see this region's nucleotide sequence