Strain Fitness in Serratia liquefaciens MT49 around IAI46_18840

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18835 and IAI46_18840 are separated by 385 nucleotidesIAI46_18840 and IAI46_18845 are separated by 22 nucleotidesIAI46_18845 and IAI46_18850 are separated by 441 nucleotides IAI46_18835: IAI46_18835 - Rrf2 family transcriptional regulator, at 3,965,908 to 3,966,450 _18835 IAI46_18840: IAI46_18840 - M48 family metallopeptidase, at 3,966,836 to 3,968,305 _18840 IAI46_18845: IAI46_18845 - arsenate reductase (glutaredoxin), at 3,968,328 to 3,968,681 _18845 IAI46_18850: IAI46_18850 - DNA-binding protein, at 3,969,123 to 3,969,662 _18850 Position (kb) 3966 3967 3968 3969Strain fitness (log2 ratio) -1 0 1 2at 3965.950 kb on - strandat 3965.980 kb on - strand, within IAI46_18835at 3966.436 kb on - strandat 3966.436 kb on - strandat 3966.436 kb on - strandat 3966.444 kb on - strandat 3966.444 kb on - strandat 3966.444 kb on - strandat 3966.444 kb on - strandat 3966.451 kb on - strandat 3966.491 kb on + strandat 3966.493 kb on + strandat 3966.643 kb on + strandat 3966.682 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.690 kb on + strandat 3966.691 kb on - strandat 3966.691 kb on - strandat 3966.764 kb on + strandat 3966.765 kb on - strandat 3966.804 kb on + strandat 3966.805 kb on - strandat 3966.805 kb on - strandat 3966.805 kb on - strandat 3966.805 kb on - strandat 3966.814 kb on + strandat 3966.814 kb on + strandat 3966.814 kb on + strandat 3966.815 kb on - strandat 3966.815 kb on - strandat 3966.815 kb on - strandat 3966.819 kb on - strandat 3966.819 kb on - strandat 3966.835 kb on + strandat 3966.835 kb on + strandat 3966.835 kb on + strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.836 kb on - strandat 3966.871 kb on - strandat 3966.871 kb on - strandat 3966.913 kb on - strandat 3966.973 kb on + strandat 3967.050 kb on + strand, within IAI46_18840at 3967.061 kb on + strand, within IAI46_18840at 3967.061 kb on + strand, within IAI46_18840at 3967.061 kb on + strand, within IAI46_18840at 3967.062 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.064 kb on - strand, within IAI46_18840at 3967.066 kb on + strand, within IAI46_18840at 3967.128 kb on - strand, within IAI46_18840at 3967.427 kb on - strand, within IAI46_18840at 3967.457 kb on - strand, within IAI46_18840at 3967.541 kb on + strand, within IAI46_18840at 3967.542 kb on - strand, within IAI46_18840at 3967.688 kb on - strand, within IAI46_18840at 3967.688 kb on - strand, within IAI46_18840at 3967.688 kb on - strand, within IAI46_18840at 3967.691 kb on + strand, within IAI46_18840at 3967.692 kb on - strand, within IAI46_18840at 3967.737 kb on - strand, within IAI46_18840at 3967.748 kb on - strand, within IAI46_18840at 3967.752 kb on + strand, within IAI46_18840at 3967.753 kb on - strand, within IAI46_18840at 3967.753 kb on - strand, within IAI46_18840at 3967.776 kb on - strand, within IAI46_18840at 3967.797 kb on - strand, within IAI46_18840at 3967.797 kb on - strand, within IAI46_18840at 3967.812 kb on - strand, within IAI46_18840at 3967.830 kb on + strand, within IAI46_18840at 3967.986 kb on + strand, within IAI46_18840at 3967.997 kb on + strand, within IAI46_18840at 3967.998 kb on - strand, within IAI46_18840at 3968.240 kb on + strandat 3968.240 kb on + strandat 3968.325 kb on + strandat 3968.342 kb on + strandat 3968.343 kb on - strandat 3968.347 kb on - strandat 3968.503 kb on + strand, within IAI46_18845at 3968.526 kb on + strand, within IAI46_18845at 3968.527 kb on - strand, within IAI46_18845at 3968.527 kb on - strand, within IAI46_18845at 3968.588 kb on - strand, within IAI46_18845at 3968.696 kb on + strandat 3968.696 kb on + strandat 3968.709 kb on + strandat 3968.710 kb on - strandat 3968.710 kb on - strandat 3968.710 kb on - strandat 3968.710 kb on - strandat 3968.717 kb on + strandat 3968.790 kb on + strandat 3968.790 kb on + strandat 3968.794 kb on - strandat 3968.794 kb on - strandat 3968.849 kb on - strandat 3968.854 kb on - strandat 3968.896 kb on - strandat 3968.896 kb on - strandat 3968.896 kb on - strandat 3968.905 kb on - strandat 3968.905 kb on - strandat 3968.945 kb on + strandat 3968.945 kb on + strandat 3969.012 kb on + strandat 3969.012 kb on + strandat 3969.012 kb on + strandat 3969.012 kb on + strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.013 kb on - strandat 3969.021 kb on + strandat 3969.021 kb on + strandat 3969.021 kb on + strandat 3969.022 kb on - strandat 3969.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,965,950 - +1.2
3,965,980 - IAI46_18835 0.13 +0.7
3,966,436 - +0.5
3,966,436 - +1.1
3,966,436 - +0.5
3,966,444 - +0.8
3,966,444 - -0.3
3,966,444 - +0.8
3,966,444 - -0.2
3,966,451 - -0.6
3,966,491 + +0.7
3,966,493 + +0.0
3,966,643 + -0.1
3,966,682 + -0.3
3,966,690 + +1.1
3,966,690 + +1.0
3,966,690 + +0.2
3,966,690 + -0.3
3,966,690 + +0.1
3,966,691 - -0.3
3,966,691 - -0.7
3,966,764 + +0.2
3,966,765 - +0.6
3,966,804 + +0.7
3,966,805 - -1.0
3,966,805 - -0.1
3,966,805 - +1.3
3,966,805 - +0.5
3,966,814 + +1.1
3,966,814 + +0.2
3,966,814 + +0.5
3,966,815 - +1.1
3,966,815 - +0.5
3,966,815 - -0.2
3,966,819 - +0.2
3,966,819 - -0.6
3,966,835 + -0.3
3,966,835 + +0.3
3,966,835 + -0.3
3,966,836 - -1.3
3,966,836 - +0.5
3,966,836 - -0.7
3,966,836 - -1.5
3,966,836 - +0.2
3,966,871 - +1.1
3,966,871 - -0.9
3,966,913 - +0.2
3,966,973 + +0.4
3,967,050 + IAI46_18840 0.15 +0.4
3,967,061 + IAI46_18840 0.15 -0.7
3,967,061 + IAI46_18840 0.15 -1.6
3,967,061 + IAI46_18840 0.15 -0.4
3,967,062 - IAI46_18840 0.15 +0.3
3,967,064 - IAI46_18840 0.16 -0.3
3,967,064 - IAI46_18840 0.16 +0.9
3,967,064 - IAI46_18840 0.16 +0.6
3,967,064 - IAI46_18840 0.16 -0.2
3,967,066 + IAI46_18840 0.16 -0.3
3,967,128 - IAI46_18840 0.20 -0.5
3,967,427 - IAI46_18840 0.40 -0.6
3,967,457 - IAI46_18840 0.42 +0.2
3,967,541 + IAI46_18840 0.48 -0.4
3,967,542 - IAI46_18840 0.48 +0.6
3,967,688 - IAI46_18840 0.58 +0.0
3,967,688 - IAI46_18840 0.58 -0.8
3,967,688 - IAI46_18840 0.58 -0.4
3,967,691 + IAI46_18840 0.58 +1.1
3,967,692 - IAI46_18840 0.58 +0.1
3,967,737 - IAI46_18840 0.61 +0.2
3,967,748 - IAI46_18840 0.62 -0.4
3,967,752 + IAI46_18840 0.62 -0.9
3,967,753 - IAI46_18840 0.62 +1.8
3,967,753 - IAI46_18840 0.62 -1.2
3,967,776 - IAI46_18840 0.64 +0.6
3,967,797 - IAI46_18840 0.65 +0.2
3,967,797 - IAI46_18840 0.65 +0.1
3,967,812 - IAI46_18840 0.66 -0.6
3,967,830 + IAI46_18840 0.68 +0.1
3,967,986 + IAI46_18840 0.78 -1.2
3,967,997 + IAI46_18840 0.79 +1.0
3,967,998 - IAI46_18840 0.79 -0.2
3,968,240 + +0.5
3,968,240 + -0.5
3,968,325 + +0.4
3,968,342 + -0.0
3,968,343 - +0.4
3,968,347 - -0.7
3,968,503 + IAI46_18845 0.49 +0.8
3,968,526 + IAI46_18845 0.56 -0.3
3,968,527 - IAI46_18845 0.56 -0.2
3,968,527 - IAI46_18845 0.56 -0.0
3,968,588 - IAI46_18845 0.73 +0.2
3,968,696 + +0.1
3,968,696 + -1.0
3,968,709 + -0.2
3,968,710 - -0.2
3,968,710 - -0.1
3,968,710 - +0.8
3,968,710 - -0.5
3,968,717 + +0.3
3,968,790 + +0.5
3,968,790 + +0.2
3,968,794 - +0.6
3,968,794 - +0.2
3,968,849 - +0.5
3,968,854 - +0.2
3,968,896 - -0.0
3,968,896 - +0.2
3,968,896 - +1.0
3,968,905 - +0.1
3,968,905 - -0.1
3,968,945 + -0.2
3,968,945 + -0.4
3,969,012 + +0.3
3,969,012 + +1.1
3,969,012 + +0.2
3,969,012 + +0.1
3,969,013 - +0.1
3,969,013 - -0.7
3,969,013 - -1.4
3,969,013 - -1.1
3,969,013 - -0.2
3,969,013 - -0.7
3,969,021 + -0.6
3,969,021 + +0.2
3,969,021 + +1.1
3,969,022 - +0.9
3,969,122 + +0.3

Or see this region's nucleotide sequence