Strain Fitness in Serratia liquefaciens MT49 around IAI46_17710

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17700 and IAI46_17705 are separated by 96 nucleotidesIAI46_17705 and IAI46_17710 are separated by 23 nucleotidesIAI46_17710 and IAI46_17715 are separated by 710 nucleotides IAI46_17700: IAI46_17700 - NADH-quinone oxidoreductase subunit C/D, at 3,730,307 to 3,732,103 _17700 IAI46_17705: IAI46_17705 - NADH-quinone oxidoreductase subunit B, at 3,732,200 to 3,732,874 _17705 IAI46_17710: IAI46_17710 - NADH-quinone oxidoreductase subunit A, at 3,732,898 to 3,733,335 _17710 IAI46_17715: IAI46_17715 - transcriptional regulator LrhA, at 3,734,046 to 3,734,981 _17715 Position (kb) 3732 3733 3734Strain fitness (log2 ratio) -2 -1 0 1at 3731.899 kb on - strand, within IAI46_17700at 3731.899 kb on - strand, within IAI46_17700at 3731.931 kb on - strandat 3731.940 kb on - strandat 3732.103 kb on + strandat 3732.122 kb on + strandat 3732.123 kb on - strandat 3732.169 kb on - strandat 3732.176 kb on + strandat 3732.176 kb on + strandat 3732.176 kb on + strandat 3732.202 kb on - strandat 3732.275 kb on - strand, within IAI46_17705at 3732.286 kb on - strand, within IAI46_17705at 3732.402 kb on + strand, within IAI46_17705at 3732.402 kb on + strand, within IAI46_17705at 3732.403 kb on - strand, within IAI46_17705at 3732.403 kb on - strand, within IAI46_17705at 3732.447 kb on + strand, within IAI46_17705at 3732.448 kb on - strand, within IAI46_17705at 3732.457 kb on - strand, within IAI46_17705at 3732.608 kb on + strand, within IAI46_17705at 3732.693 kb on + strand, within IAI46_17705at 3732.704 kb on - strand, within IAI46_17705at 3732.704 kb on - strand, within IAI46_17705at 3732.763 kb on - strand, within IAI46_17705at 3732.866 kb on - strandat 3732.866 kb on - strandat 3732.867 kb on + strandat 3732.878 kb on - strandat 3732.900 kb on - strandat 3732.995 kb on + strand, within IAI46_17710at 3732.996 kb on - strand, within IAI46_17710at 3733.013 kb on - strand, within IAI46_17710at 3733.091 kb on + strand, within IAI46_17710at 3733.092 kb on - strand, within IAI46_17710at 3733.158 kb on + strand, within IAI46_17710at 3733.256 kb on - strand, within IAI46_17710at 3733.336 kb on - strandat 3733.336 kb on - strandat 3733.336 kb on - strandat 3733.340 kb on + strandat 3733.347 kb on - strandat 3733.393 kb on + strandat 3733.394 kb on - strandat 3733.411 kb on + strandat 3733.423 kb on - strandat 3733.427 kb on - strandat 3733.496 kb on + strandat 3733.529 kb on - strandat 3733.555 kb on + strandat 3733.585 kb on + strandat 3733.620 kb on + strandat 3733.621 kb on - strandat 3733.625 kb on - strandat 3733.693 kb on + strandat 3733.693 kb on + strandat 3733.820 kb on + strandat 3733.820 kb on + strandat 3733.820 kb on + strandat 3733.838 kb on - strandat 3734.047 kb on + strandat 3734.048 kb on - strandat 3734.191 kb on + strand, within IAI46_17715at 3734.191 kb on + strand, within IAI46_17715at 3734.191 kb on + strand, within IAI46_17715at 3734.192 kb on - strand, within IAI46_17715at 3734.198 kb on + strand, within IAI46_17715at 3734.294 kb on + strand, within IAI46_17715at 3734.295 kb on - strand, within IAI46_17715at 3734.332 kb on + strand, within IAI46_17715at 3734.333 kb on - strand, within IAI46_17715

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,731,899 - IAI46_17700 0.89 +1.1
3,731,899 - IAI46_17700 0.89 +0.8
3,731,931 - -0.8
3,731,940 - -1.1
3,732,103 + +0.4
3,732,122 + -1.2
3,732,123 - -1.1
3,732,169 - +0.9
3,732,176 + +0.7
3,732,176 + +0.8
3,732,176 + +0.1
3,732,202 - -0.8
3,732,275 - IAI46_17705 0.11 +0.5
3,732,286 - IAI46_17705 0.13 +0.1
3,732,402 + IAI46_17705 0.30 -0.8
3,732,402 + IAI46_17705 0.30 +0.5
3,732,403 - IAI46_17705 0.30 +1.4
3,732,403 - IAI46_17705 0.30 +1.0
3,732,447 + IAI46_17705 0.37 +1.0
3,732,448 - IAI46_17705 0.37 +1.5
3,732,457 - IAI46_17705 0.38 +0.3
3,732,608 + IAI46_17705 0.60 -2.2
3,732,693 + IAI46_17705 0.73 -1.0
3,732,704 - IAI46_17705 0.75 +0.0
3,732,704 - IAI46_17705 0.75 +1.0
3,732,763 - IAI46_17705 0.83 +0.2
3,732,866 - -0.2
3,732,866 - +0.7
3,732,867 + -0.6
3,732,878 - -0.6
3,732,900 - +0.4
3,732,995 + IAI46_17710 0.22 +1.0
3,732,996 - IAI46_17710 0.22 -0.0
3,733,013 - IAI46_17710 0.26 +0.4
3,733,091 + IAI46_17710 0.44 +0.2
3,733,092 - IAI46_17710 0.44 +1.1
3,733,158 + IAI46_17710 0.59 -1.4
3,733,256 - IAI46_17710 0.82 +1.1
3,733,336 - -0.4
3,733,336 - +1.1
3,733,336 - -2.2
3,733,340 + -0.7
3,733,347 - -0.9
3,733,393 + -0.9
3,733,394 - -0.4
3,733,411 + -0.7
3,733,423 - -0.5
3,733,427 - +1.5
3,733,496 + -1.2
3,733,529 - -0.4
3,733,555 + +0.7
3,733,585 + +0.3
3,733,620 + -0.3
3,733,621 - -0.1
3,733,625 - -0.6
3,733,693 + +0.6
3,733,693 + +1.4
3,733,820 + +0.6
3,733,820 + +0.1
3,733,820 + +0.1
3,733,838 - -0.5
3,734,047 + +1.1
3,734,048 - -0.1
3,734,191 + IAI46_17715 0.15 -2.0
3,734,191 + IAI46_17715 0.15 +0.6
3,734,191 + IAI46_17715 0.15 -0.2
3,734,192 - IAI46_17715 0.16 -0.4
3,734,198 + IAI46_17715 0.16 -0.7
3,734,294 + IAI46_17715 0.26 +0.2
3,734,295 - IAI46_17715 0.27 -0.9
3,734,332 + IAI46_17715 0.31 -0.2
3,734,333 - IAI46_17715 0.31 -0.4

Or see this region's nucleotide sequence