Strain Fitness in Serratia liquefaciens MT49 around IAI46_17700

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17690 and IAI46_17695 overlap by 4 nucleotidesIAI46_17695 and IAI46_17700 are separated by 50 nucleotidesIAI46_17700 and IAI46_17705 are separated by 96 nucleotidesIAI46_17705 and IAI46_17710 are separated by 23 nucleotides IAI46_17690: IAI46_17690 - NADH-quinone oxidoreductase subunit NuoF, at 3,728,404 to 3,729,756 _17690 IAI46_17695: IAI46_17695 - NADH-quinone oxidoreductase subunit NuoE, at 3,729,753 to 3,730,256 _17695 IAI46_17700: IAI46_17700 - NADH-quinone oxidoreductase subunit C/D, at 3,730,307 to 3,732,103 _17700 IAI46_17705: IAI46_17705 - NADH-quinone oxidoreductase subunit B, at 3,732,200 to 3,732,874 _17705 IAI46_17710: IAI46_17710 - NADH-quinone oxidoreductase subunit A, at 3,732,898 to 3,733,335 _17710 Position (kb) 3730 3731 3732 3733Strain fitness (log2 ratio) -2 -1 0 1 2at 3729.347 kb on + strand, within IAI46_17690at 3729.366 kb on + strand, within IAI46_17690at 3729.366 kb on + strand, within IAI46_17690at 3729.366 kb on + strand, within IAI46_17690at 3729.367 kb on - strand, within IAI46_17690at 3729.369 kb on - strand, within IAI46_17690at 3729.458 kb on + strand, within IAI46_17690at 3729.459 kb on - strand, within IAI46_17690at 3729.739 kb on + strandat 3729.739 kb on + strandat 3729.740 kb on - strandat 3729.740 kb on - strandat 3729.740 kb on - strandat 3729.760 kb on + strandat 3729.772 kb on - strandat 3730.028 kb on - strand, within IAI46_17695at 3730.048 kb on - strand, within IAI46_17695at 3730.168 kb on + strand, within IAI46_17695at 3730.305 kb on - strandat 3730.340 kb on - strandat 3730.340 kb on - strandat 3730.427 kb on + strandat 3730.473 kb on + strandat 3730.474 kb on - strandat 3730.474 kb on - strandat 3730.474 kb on - strandat 3730.698 kb on - strand, within IAI46_17700at 3730.698 kb on - strand, within IAI46_17700at 3730.870 kb on - strand, within IAI46_17700at 3730.929 kb on + strand, within IAI46_17700at 3730.930 kb on - strand, within IAI46_17700at 3731.039 kb on - strand, within IAI46_17700at 3731.138 kb on - strand, within IAI46_17700at 3731.146 kb on - strand, within IAI46_17700at 3731.308 kb on - strand, within IAI46_17700at 3731.308 kb on - strand, within IAI46_17700at 3731.599 kb on + strand, within IAI46_17700at 3731.668 kb on + strand, within IAI46_17700at 3731.669 kb on - strand, within IAI46_17700at 3731.700 kb on + strand, within IAI46_17700at 3731.701 kb on - strand, within IAI46_17700at 3731.779 kb on + strand, within IAI46_17700at 3731.779 kb on + strand, within IAI46_17700at 3731.812 kb on - strand, within IAI46_17700at 3731.899 kb on - strand, within IAI46_17700at 3731.899 kb on - strand, within IAI46_17700at 3731.931 kb on - strandat 3731.940 kb on - strandat 3732.103 kb on + strandat 3732.122 kb on + strandat 3732.123 kb on - strandat 3732.169 kb on - strandat 3732.176 kb on + strandat 3732.176 kb on + strandat 3732.176 kb on + strandat 3732.202 kb on - strandat 3732.275 kb on - strand, within IAI46_17705at 3732.286 kb on - strand, within IAI46_17705at 3732.402 kb on + strand, within IAI46_17705at 3732.402 kb on + strand, within IAI46_17705at 3732.403 kb on - strand, within IAI46_17705at 3732.403 kb on - strand, within IAI46_17705at 3732.447 kb on + strand, within IAI46_17705at 3732.448 kb on - strand, within IAI46_17705at 3732.457 kb on - strand, within IAI46_17705at 3732.608 kb on + strand, within IAI46_17705at 3732.693 kb on + strand, within IAI46_17705at 3732.704 kb on - strand, within IAI46_17705at 3732.704 kb on - strand, within IAI46_17705at 3732.763 kb on - strand, within IAI46_17705at 3732.866 kb on - strandat 3732.866 kb on - strandat 3732.867 kb on + strandat 3732.878 kb on - strandat 3732.900 kb on - strandat 3732.995 kb on + strand, within IAI46_17710at 3732.996 kb on - strand, within IAI46_17710at 3733.013 kb on - strand, within IAI46_17710at 3733.091 kb on + strand, within IAI46_17710at 3733.092 kb on - strand, within IAI46_17710

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,729,347 + IAI46_17690 0.70 -1.9
3,729,366 + IAI46_17690 0.71 +0.4
3,729,366 + IAI46_17690 0.71 +0.3
3,729,366 + IAI46_17690 0.71 -0.4
3,729,367 - IAI46_17690 0.71 -1.0
3,729,369 - IAI46_17690 0.71 -1.2
3,729,458 + IAI46_17690 0.78 +0.6
3,729,459 - IAI46_17690 0.78 +0.4
3,729,739 + -2.0
3,729,739 + -0.6
3,729,740 - +0.9
3,729,740 - -0.6
3,729,740 - -0.6
3,729,760 + -0.1
3,729,772 - +1.1
3,730,028 - IAI46_17695 0.55 +0.7
3,730,048 - IAI46_17695 0.59 +0.4
3,730,168 + IAI46_17695 0.82 +0.9
3,730,305 - -0.1
3,730,340 - +0.9
3,730,340 - -1.4
3,730,427 + -1.2
3,730,473 + +0.9
3,730,474 - +0.4
3,730,474 - +1.7
3,730,474 - -0.6
3,730,698 - IAI46_17700 0.22 +0.1
3,730,698 - IAI46_17700 0.22 +0.9
3,730,870 - IAI46_17700 0.31 +0.7
3,730,929 + IAI46_17700 0.35 +0.6
3,730,930 - IAI46_17700 0.35 -1.0
3,731,039 - IAI46_17700 0.41 -1.6
3,731,138 - IAI46_17700 0.46 -0.1
3,731,146 - IAI46_17700 0.47 -0.6
3,731,308 - IAI46_17700 0.56 -0.1
3,731,308 - IAI46_17700 0.56 -0.5
3,731,599 + IAI46_17700 0.72 +0.5
3,731,668 + IAI46_17700 0.76 +0.2
3,731,669 - IAI46_17700 0.76 +0.1
3,731,700 + IAI46_17700 0.78 -0.9
3,731,701 - IAI46_17700 0.78 -0.6
3,731,779 + IAI46_17700 0.82 +1.9
3,731,779 + IAI46_17700 0.82 +0.4
3,731,812 - IAI46_17700 0.84 +0.8
3,731,899 - IAI46_17700 0.89 +1.1
3,731,899 - IAI46_17700 0.89 +0.8
3,731,931 - -0.8
3,731,940 - -1.1
3,732,103 + +0.4
3,732,122 + -1.2
3,732,123 - -1.1
3,732,169 - +0.9
3,732,176 + +0.7
3,732,176 + +0.8
3,732,176 + +0.1
3,732,202 - -0.8
3,732,275 - IAI46_17705 0.11 +0.5
3,732,286 - IAI46_17705 0.13 +0.1
3,732,402 + IAI46_17705 0.30 -0.8
3,732,402 + IAI46_17705 0.30 +0.5
3,732,403 - IAI46_17705 0.30 +1.4
3,732,403 - IAI46_17705 0.30 +1.0
3,732,447 + IAI46_17705 0.37 +1.0
3,732,448 - IAI46_17705 0.37 +1.5
3,732,457 - IAI46_17705 0.38 +0.3
3,732,608 + IAI46_17705 0.60 -2.2
3,732,693 + IAI46_17705 0.73 -1.0
3,732,704 - IAI46_17705 0.75 +0.0
3,732,704 - IAI46_17705 0.75 +1.0
3,732,763 - IAI46_17705 0.83 +0.2
3,732,866 - -0.2
3,732,866 - +0.7
3,732,867 + -0.6
3,732,878 - -0.6
3,732,900 - +0.4
3,732,995 + IAI46_17710 0.22 +1.0
3,732,996 - IAI46_17710 0.22 -0.0
3,733,013 - IAI46_17710 0.26 +0.4
3,733,091 + IAI46_17710 0.44 +0.2
3,733,092 - IAI46_17710 0.44 +1.1

Or see this region's nucleotide sequence