Strain Fitness in Serratia liquefaciens MT49 around IAI46_17655

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17650 and IAI46_17655 are separated by 6 nucleotidesIAI46_17655 and IAI46_17660 are separated by 185 nucleotides IAI46_17650: IAI46_17650 - NADH-quinone oxidoreductase subunit NuoN, at 3,718,159 to 3,719,616 _17650 IAI46_17655: IAI46_17655 - NADH-quinone oxidoreductase subunit M, at 3,719,623 to 3,721,152 _17655 IAI46_17660: IAI46_17660 - NADH-quinone oxidoreductase subunit L, at 3,721,338 to 3,723,185 _17660 Position (kb) 3719 3720 3721 3722Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3719.141 kb on + strand, within IAI46_17650at 3719.300 kb on + strand, within IAI46_17650at 3719.352 kb on + strand, within IAI46_17650at 3719.391 kb on - strand, within IAI46_17650at 3719.391 kb on - strand, within IAI46_17650at 3719.391 kb on - strand, within IAI46_17650at 3719.459 kb on + strand, within IAI46_17650at 3719.539 kb on + strandat 3719.608 kb on + strandat 3719.624 kb on + strandat 3719.695 kb on - strandat 3719.695 kb on - strandat 3719.695 kb on - strandat 3719.823 kb on - strand, within IAI46_17655at 3719.823 kb on - strand, within IAI46_17655at 3719.909 kb on + strand, within IAI46_17655at 3719.946 kb on + strand, within IAI46_17655at 3720.006 kb on - strand, within IAI46_17655at 3720.012 kb on + strand, within IAI46_17655at 3720.162 kb on - strand, within IAI46_17655at 3720.162 kb on - strand, within IAI46_17655at 3720.491 kb on + strand, within IAI46_17655at 3720.491 kb on + strand, within IAI46_17655at 3720.562 kb on - strand, within IAI46_17655at 3720.565 kb on - strand, within IAI46_17655at 3720.624 kb on - strand, within IAI46_17655at 3720.818 kb on + strand, within IAI46_17655at 3721.077 kb on + strandat 3721.147 kb on + strandat 3721.148 kb on - strandat 3721.148 kb on - strandat 3721.169 kb on + strandat 3721.174 kb on + strandat 3721.175 kb on - strandat 3721.231 kb on - strandat 3721.231 kb on - strandat 3721.297 kb on - strandat 3721.307 kb on - strandat 3721.307 kb on - strandat 3721.311 kb on - strandat 3721.311 kb on - strandat 3721.331 kb on - strandat 3721.362 kb on + strandat 3721.385 kb on + strandat 3721.392 kb on + strandat 3721.395 kb on - strandat 3721.396 kb on + strandat 3721.397 kb on - strandat 3721.534 kb on - strand, within IAI46_17660at 3721.656 kb on + strand, within IAI46_17660at 3721.674 kb on - strand, within IAI46_17660at 3721.674 kb on - strand, within IAI46_17660at 3721.692 kb on - strand, within IAI46_17660at 3721.713 kb on - strand, within IAI46_17660at 3721.733 kb on + strand, within IAI46_17660at 3721.744 kb on - strand, within IAI46_17660at 3721.983 kb on - strand, within IAI46_17660at 3722.051 kb on - strand, within IAI46_17660

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,719,141 + IAI46_17650 0.67 -1.1
3,719,300 + IAI46_17650 0.78 -0.1
3,719,352 + IAI46_17650 0.82 -0.2
3,719,391 - IAI46_17650 0.84 -0.6
3,719,391 - IAI46_17650 0.84 -0.6
3,719,391 - IAI46_17650 0.84 -0.1
3,719,459 + IAI46_17650 0.89 -0.6
3,719,539 + -0.4
3,719,608 + +1.9
3,719,624 + -1.4
3,719,695 - +0.9
3,719,695 - +0.3
3,719,695 - +0.5
3,719,823 - IAI46_17655 0.13 -1.4
3,719,823 - IAI46_17655 0.13 -0.9
3,719,909 + IAI46_17655 0.19 +0.4
3,719,946 + IAI46_17655 0.21 +0.9
3,720,006 - IAI46_17655 0.25 -0.1
3,720,012 + IAI46_17655 0.25 -0.6
3,720,162 - IAI46_17655 0.35 -1.6
3,720,162 - IAI46_17655 0.35 -2.4
3,720,491 + IAI46_17655 0.57 -2.2
3,720,491 + IAI46_17655 0.57 -0.4
3,720,562 - IAI46_17655 0.61 +0.5
3,720,565 - IAI46_17655 0.62 -0.1
3,720,624 - IAI46_17655 0.65 -1.5
3,720,818 + IAI46_17655 0.78 +0.4
3,721,077 + +1.5
3,721,147 + +0.6
3,721,148 - +1.4
3,721,148 - +1.1
3,721,169 + -0.2
3,721,174 + +1.1
3,721,175 - +0.9
3,721,231 - -0.1
3,721,231 - +0.4
3,721,297 - +1.1
3,721,307 - +3.1
3,721,307 - -0.9
3,721,311 - -1.8
3,721,311 - +0.0
3,721,331 - +0.7
3,721,362 + +0.4
3,721,385 + +1.2
3,721,392 + +0.5
3,721,395 - +0.8
3,721,396 + +0.7
3,721,397 - -0.4
3,721,534 - IAI46_17660 0.11 -0.9
3,721,656 + IAI46_17660 0.17 +0.9
3,721,674 - IAI46_17660 0.18 +0.4
3,721,674 - IAI46_17660 0.18 -0.7
3,721,692 - IAI46_17660 0.19 -0.3
3,721,713 - IAI46_17660 0.20 +0.1
3,721,733 + IAI46_17660 0.21 -0.4
3,721,744 - IAI46_17660 0.22 +0.5
3,721,983 - IAI46_17660 0.35 -0.9
3,722,051 - IAI46_17660 0.39 -0.9

Or see this region's nucleotide sequence