Strain Fitness in Serratia liquefaciens MT49 around IAI46_17545

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17540 and IAI46_17545 overlap by 13 nucleotidesIAI46_17545 and IAI46_17550 are separated by 11 nucleotidesIAI46_17550 and IAI46_17555 are separated by 11 nucleotides IAI46_17540: IAI46_17540 - o-succinylbenzoate--CoA ligase, at 3,688,373 to 3,689,758 _17540 IAI46_17545: IAI46_17545 - o-succinylbenzoate synthase, at 3,689,746 to 3,690,717 _17545 IAI46_17550: IAI46_17550 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 3,690,729 to 3,691,586 _17550 IAI46_17555: IAI46_17555 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,691,598 to 3,692,365 _17555 Position (kb) 3689 3690 3691Strain fitness (log2 ratio) -2 -1 0 1 2at 3688.849 kb on + strand, within IAI46_17540at 3689.092 kb on + strand, within IAI46_17540at 3689.125 kb on + strand, within IAI46_17540at 3689.126 kb on - strand, within IAI46_17540at 3689.280 kb on + strand, within IAI46_17540at 3689.280 kb on + strand, within IAI46_17540at 3689.281 kb on - strand, within IAI46_17540at 3689.281 kb on - strand, within IAI46_17540at 3689.386 kb on + strand, within IAI46_17540at 3689.387 kb on - strand, within IAI46_17540at 3689.642 kb on - strandat 3689.748 kb on - strandat 3689.815 kb on + strandat 3690.185 kb on + strand, within IAI46_17545at 3690.186 kb on - strand, within IAI46_17545at 3690.280 kb on + strand, within IAI46_17545at 3690.281 kb on - strand, within IAI46_17545at 3690.306 kb on - strand, within IAI46_17545at 3690.306 kb on - strand, within IAI46_17545at 3690.306 kb on - strand, within IAI46_17545at 3690.730 kb on + strandat 3690.730 kb on + strandat 3690.814 kb on + strandat 3690.815 kb on - strand, within IAI46_17550at 3690.815 kb on - strand, within IAI46_17550at 3690.815 kb on - strand, within IAI46_17550at 3690.943 kb on - strand, within IAI46_17550at 3691.078 kb on + strand, within IAI46_17550at 3691.078 kb on + strand, within IAI46_17550at 3691.079 kb on - strand, within IAI46_17550at 3691.172 kb on + strand, within IAI46_17550at 3691.179 kb on + strand, within IAI46_17550at 3691.180 kb on - strand, within IAI46_17550at 3691.180 kb on - strand, within IAI46_17550at 3691.180 kb on - strand, within IAI46_17550at 3691.370 kb on + strand, within IAI46_17550at 3691.371 kb on - strand, within IAI46_17550at 3691.469 kb on + strand, within IAI46_17550at 3691.507 kb on + strandat 3691.515 kb on - strandat 3691.559 kb on - strandat 3691.579 kb on + strandat 3691.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,688,849 + IAI46_17540 0.34 -0.1
3,689,092 + IAI46_17540 0.52 +0.6
3,689,125 + IAI46_17540 0.54 +1.1
3,689,126 - IAI46_17540 0.54 +2.2
3,689,280 + IAI46_17540 0.65 +0.7
3,689,280 + IAI46_17540 0.65 +0.9
3,689,281 - IAI46_17540 0.66 -0.3
3,689,281 - IAI46_17540 0.66 +0.8
3,689,386 + IAI46_17540 0.73 +0.3
3,689,387 - IAI46_17540 0.73 +0.9
3,689,642 - +0.3
3,689,748 - -0.6
3,689,815 + +0.0
3,690,185 + IAI46_17545 0.45 +0.7
3,690,186 - IAI46_17545 0.45 -0.1
3,690,280 + IAI46_17545 0.55 -0.1
3,690,281 - IAI46_17545 0.55 +0.6
3,690,306 - IAI46_17545 0.58 -2.0
3,690,306 - IAI46_17545 0.58 +0.7
3,690,306 - IAI46_17545 0.58 -0.2
3,690,730 + +0.9
3,690,730 + -0.7
3,690,814 + -0.2
3,690,815 - IAI46_17550 0.10 -2.2
3,690,815 - IAI46_17550 0.10 -0.2
3,690,815 - IAI46_17550 0.10 +0.2
3,690,943 - IAI46_17550 0.25 -0.4
3,691,078 + IAI46_17550 0.41 +1.3
3,691,078 + IAI46_17550 0.41 +0.3
3,691,079 - IAI46_17550 0.41 -0.1
3,691,172 + IAI46_17550 0.52 +0.5
3,691,179 + IAI46_17550 0.52 -0.6
3,691,180 - IAI46_17550 0.53 +0.8
3,691,180 - IAI46_17550 0.53 -0.1
3,691,180 - IAI46_17550 0.53 +0.4
3,691,370 + IAI46_17550 0.75 +0.4
3,691,371 - IAI46_17550 0.75 -0.8
3,691,469 + IAI46_17550 0.86 -0.3
3,691,507 + -0.1
3,691,515 - +0.5
3,691,559 - -1.2
3,691,579 + +0.0
3,691,666 + -0.4

Or see this region's nucleotide sequence