Strain Fitness in Serratia liquefaciens MT49 around IAI46_16720

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16715 and IAI46_16720 are separated by 164 nucleotidesIAI46_16720 and IAI46_16725 are separated by 835 nucleotides IAI46_16715: IAI46_16715 - phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase, at 3,500,859 to 3,503,162 _16715 IAI46_16720: IAI46_16720 - AMP nucleosidase, at 3,503,327 to 3,504,787 _16720 IAI46_16725: IAI46_16725 - hypothetical protein, at 3,505,623 to 3,506,540 _16725 Position (kb) 3503 3504 3505Strain fitness (log2 ratio) -2 -1 0 1 2at 3502.341 kb on + strand, within IAI46_16715at 3502.342 kb on - strand, within IAI46_16715at 3502.371 kb on - strand, within IAI46_16715at 3502.391 kb on + strand, within IAI46_16715at 3502.391 kb on + strand, within IAI46_16715at 3502.392 kb on - strand, within IAI46_16715at 3502.392 kb on - strand, within IAI46_16715at 3502.449 kb on + strand, within IAI46_16715at 3502.449 kb on + strand, within IAI46_16715at 3502.524 kb on + strand, within IAI46_16715at 3502.525 kb on - strand, within IAI46_16715at 3502.635 kb on + strand, within IAI46_16715at 3502.635 kb on + strand, within IAI46_16715at 3502.636 kb on - strand, within IAI46_16715at 3502.730 kb on + strand, within IAI46_16715at 3502.757 kb on + strand, within IAI46_16715at 3502.758 kb on - strand, within IAI46_16715at 3502.758 kb on - strand, within IAI46_16715at 3502.866 kb on + strand, within IAI46_16715at 3502.866 kb on + strand, within IAI46_16715at 3503.285 kb on + strandat 3503.285 kb on + strandat 3503.327 kb on - strandat 3503.393 kb on + strandat 3503.437 kb on + strandat 3503.437 kb on + strandat 3503.484 kb on + strand, within IAI46_16720at 3503.485 kb on - strand, within IAI46_16720at 3503.579 kb on + strand, within IAI46_16720at 3503.579 kb on + strand, within IAI46_16720at 3503.580 kb on - strand, within IAI46_16720at 3503.580 kb on - strand, within IAI46_16720at 3503.581 kb on + strand, within IAI46_16720at 3503.581 kb on + strand, within IAI46_16720at 3503.582 kb on - strand, within IAI46_16720at 3503.582 kb on - strand, within IAI46_16720at 3503.619 kb on - strand, within IAI46_16720at 3503.665 kb on + strand, within IAI46_16720at 3503.665 kb on + strand, within IAI46_16720at 3503.667 kb on + strand, within IAI46_16720at 3503.667 kb on + strand, within IAI46_16720at 3503.667 kb on + strand, within IAI46_16720at 3503.668 kb on - strand, within IAI46_16720at 3503.897 kb on + strand, within IAI46_16720at 3503.948 kb on + strand, within IAI46_16720at 3503.957 kb on + strand, within IAI46_16720at 3504.014 kb on + strand, within IAI46_16720at 3504.014 kb on + strand, within IAI46_16720at 3504.014 kb on + strand, within IAI46_16720at 3504.044 kb on + strand, within IAI46_16720at 3504.044 kb on + strand, within IAI46_16720at 3504.044 kb on + strand, within IAI46_16720at 3504.045 kb on - strand, within IAI46_16720at 3504.045 kb on - strand, within IAI46_16720at 3504.045 kb on - strand, within IAI46_16720at 3504.045 kb on - strand, within IAI46_16720at 3504.047 kb on - strand, within IAI46_16720at 3504.047 kb on - strand, within IAI46_16720at 3504.302 kb on + strand, within IAI46_16720at 3504.302 kb on + strand, within IAI46_16720at 3504.386 kb on + strand, within IAI46_16720at 3504.386 kb on + strand, within IAI46_16720at 3504.387 kb on - strand, within IAI46_16720at 3504.430 kb on - strand, within IAI46_16720at 3504.665 kb on + strandat 3504.665 kb on + strandat 3504.761 kb on - strandat 3504.830 kb on + strandat 3504.831 kb on - strandat 3504.831 kb on - strandat 3504.879 kb on - strandat 3504.897 kb on + strandat 3504.898 kb on - strandat 3505.119 kb on + strandat 3505.119 kb on + strandat 3505.505 kb on + strandat 3505.584 kb on + strandat 3505.585 kb on - strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.622 kb on + strandat 3505.623 kb on - strandat 3505.623 kb on - strandat 3505.623 kb on - strandat 3505.712 kb on + strandat 3505.713 kb on - strandat 3505.756 kb on - strand, within IAI46_16725

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, aerobic
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3,502,341 + IAI46_16715 0.64 +0.5
3,502,342 - IAI46_16715 0.64 +0.1
3,502,371 - IAI46_16715 0.66 -0.0
3,502,391 + IAI46_16715 0.66 +0.4
3,502,391 + IAI46_16715 0.66 -0.7
3,502,392 - IAI46_16715 0.67 +1.3
3,502,392 - IAI46_16715 0.67 +1.2
3,502,449 + IAI46_16715 0.69 +0.2
3,502,449 + IAI46_16715 0.69 -1.0
3,502,524 + IAI46_16715 0.72 +0.5
3,502,525 - IAI46_16715 0.72 +1.1
3,502,635 + IAI46_16715 0.77 +0.5
3,502,635 + IAI46_16715 0.77 -0.1
3,502,636 - IAI46_16715 0.77 -0.1
3,502,730 + IAI46_16715 0.81 +0.5
3,502,757 + IAI46_16715 0.82 +0.3
3,502,758 - IAI46_16715 0.82 -0.2
3,502,758 - IAI46_16715 0.82 +0.3
3,502,866 + IAI46_16715 0.87 +1.0
3,502,866 + IAI46_16715 0.87 -0.1
3,503,285 + +0.2
3,503,285 + +1.4
3,503,327 - -0.2
3,503,393 + +0.7
3,503,437 + +0.1
3,503,437 + -0.5
3,503,484 + IAI46_16720 0.11 +0.6
3,503,485 - IAI46_16720 0.11 +0.2
3,503,579 + IAI46_16720 0.17 +0.2
3,503,579 + IAI46_16720 0.17 +0.3
3,503,580 - IAI46_16720 0.17 -0.8
3,503,580 - IAI46_16720 0.17 -0.1
3,503,581 + IAI46_16720 0.17 +0.7
3,503,581 + IAI46_16720 0.17 +0.1
3,503,582 - IAI46_16720 0.17 +0.8
3,503,582 - IAI46_16720 0.17 +0.5
3,503,619 - IAI46_16720 0.20 +0.8
3,503,665 + IAI46_16720 0.23 -0.4
3,503,665 + IAI46_16720 0.23 -0.3
3,503,667 + IAI46_16720 0.23 +0.6
3,503,667 + IAI46_16720 0.23 -0.4
3,503,667 + IAI46_16720 0.23 +0.0
3,503,668 - IAI46_16720 0.23 -0.7
3,503,897 + IAI46_16720 0.39 +1.9
3,503,948 + IAI46_16720 0.43 +0.0
3,503,957 + IAI46_16720 0.43 -0.2
3,504,014 + IAI46_16720 0.47 -0.0
3,504,014 + IAI46_16720 0.47 +0.6
3,504,014 + IAI46_16720 0.47 +0.8
3,504,044 + IAI46_16720 0.49 -0.6
3,504,044 + IAI46_16720 0.49 +0.3
3,504,044 + IAI46_16720 0.49 +1.2
3,504,045 - IAI46_16720 0.49 -0.6
3,504,045 - IAI46_16720 0.49 +0.2
3,504,045 - IAI46_16720 0.49 +0.1
3,504,045 - IAI46_16720 0.49 -0.7
3,504,047 - IAI46_16720 0.49 -1.2
3,504,047 - IAI46_16720 0.49 -0.2
3,504,302 + IAI46_16720 0.67 +0.3
3,504,302 + IAI46_16720 0.67 -0.4
3,504,386 + IAI46_16720 0.72 +1.8
3,504,386 + IAI46_16720 0.72 -0.4
3,504,387 - IAI46_16720 0.73 +0.3
3,504,430 - IAI46_16720 0.75 +1.0
3,504,665 + +0.6
3,504,665 + +0.0
3,504,761 - -2.6
3,504,830 + -0.4
3,504,831 - +0.6
3,504,831 - -0.9
3,504,879 - +0.4
3,504,897 + -0.0
3,504,898 - +0.2
3,505,119 + -0.3
3,505,119 + +1.2
3,505,505 + +0.2
3,505,584 + +0.7
3,505,585 - -1.2
3,505,622 + -0.1
3,505,622 + +0.3
3,505,622 + -0.5
3,505,622 + +0.3
3,505,622 + -0.8
3,505,623 - -0.7
3,505,623 - -1.1
3,505,623 - -0.5
3,505,712 + +0.9
3,505,713 - +1.5
3,505,756 - IAI46_16725 0.14 +0.1

Or see this region's nucleotide sequence